Pectobacterium polonicum: LW347_03265
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Entry
LW347_03265 CDS
T08488
Symbol
dacB
Name
(GenBank) serine-type D-Ala-D-Ala carboxypeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo00550
Peptidoglycan biosynthesis
ppoo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LW347_03265 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppoo01002
]
LW347_03265 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppoo01011
]
LW347_03265 (dacB)
Enzymes [BR:
ppoo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
LW347_03265 (dacB)
Peptidases and inhibitors [BR:
ppoo01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
LW347_03265 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppoo01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
LW347_03265 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
UVO09019
UniProt:
A0AAE9NR41
LinkDB
All DBs
Position
complement(727903..729336)
Genome browser
AA seq
477 aa
AA seq
DB search
MRFSSIVTGLACAFVLHANAASVEDHRQYLPDGANLALLVQKVGATTPSMAFNSQQMALP
ASTQKVITALAALLQLGPDYRFITSMESHGPVTSGILNGNLIVRFGGDPTLKRQQIRNMV
QELRKRGIQEIAGDVLIDTSVFASHDKSPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS
APKAGDNAFIRVASYYPVQMFSEVRTLAKGSPDAQYCELDVIPGELNRFTLTGCLTQRTE
PLPLAFAIQDGASYAGAIVKDELQQADIRIKGSLRRQTQPSAAGSVLAQTQSAPLHDLLT
IMLKKSDNMIADTVFRTIGHERFSVPGTWRAGADAVRQILRQKAGVDLGNSIVVDGSGLS
RHNLISPETMMQVLQYIAQHDNELNYITMLPLSGYDGTLRYRGGLHEAGVDGKVSAKTGA
LQGVYNRAGFITTASGQRMAFVQFLSGYAVPPEDQRARRVPLVRFESRLYKDIYQSN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttttcatcgattgttaccggacttgcctgcgcttttgttctgcatgccaatgca
gcttctgttgaggatcatcgtcaatatttgccagacggcgccaatttggcgttattggta
cagaaagttggcgcaacaacacccagcatggccttcaatagccagcaaatggcgcttccc
gccagtacgcaaaaggtgataactgcattagctgcattactacaattgggtccagattat
cgattcatcacctcgatggaaagccatggccctgtcaccagcggaattctgaacggtaac
ctcatcgtacgatttggcggcgacccaaccctgaaacgccagcaaatacggaatatggtg
caggaattaaggaaacgaggaatacaggaaatcgcaggcgatgtgctgatcgatacctcc
gtttttgccagtcacgataaatcacctggctggccttggaacgacatgacacagtgtttc
agcgccccgccggcggcggctattgtcgatcgtaactgtttttccgtttcgctctacagc
gcgcctaaagcgggtgataacgcattcatccgcgttgcatcctattatccagtgcaaatg
ttcagcgaggtgcgcacgctggcaaaaggttctcccgatgcgcaatactgcgaactggat
gtgattcccggagaattaaatcgctttacgctcacaggctgtctgactcagcgtacagaa
ccccttccgctggcattcgctattcaggatggagccagctatgccggcgcaatcgttaaa
gatgaattacagcaggcagatatccgcattaaaggcagcctacgccgacagacgcagcct
agtgccgcgggaagcgtgcttgcccagacacaatcagcgccactgcatgaccttctcact
atcatgctaaaaaaatccgacaacatgattgccgatacggtctttcgcaccattgggcat
gaacgctttagtgtaccgggaacgtggcgtgcaggtgccgatgctgtgcgccagattctg
cgtcagaaagcaggtgtagatttaggaaacagcattgttgttgacggttcgggtttatca
cgacacaacctgatttcaccggaaacgatgatgcaggtattacagtacatcgcgcagcac
gataatgagctaaattacatcacaatgcttccgctttccggctatgacggtacgttacgt
taccgtggcggcctgcacgaagcgggggttgatggcaaggtttcggctaaaacaggggcc
ttacagggcgtatacaatcgggcaggtttcattaccaccgcgagcggccagcgtatggca
ttcgttcagttcttatcaggctacgctgttccaccagaagaccagcgcgcacgtcgcgtc
cctctggtgagatttgaaagccgcctctacaaagacatttatcagagcaactaa
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