Pectobacterium polonicum: LW347_03355
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Entry
LW347_03355 CDS
T08488
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW347_03355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoo03019
]
LW347_03355
03009 Ribosome biogenesis [BR:
ppoo03009
]
LW347_03355
Enzymes [BR:
ppoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LW347_03355
Messenger RNA biogenesis [BR:
ppoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LW347_03355
Ribosome biogenesis [BR:
ppoo03009
]
Prokaryotic type
rRNA helicases
LW347_03355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVO09034
UniProt:
A0AAE9NR49
LinkDB
All DBs
Position
747961..749859
Genome browser
AA seq
632 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAA
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPAVRPRREFRDRDESRGDSRGDRRRDPRDSRESRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNGNGGERRERSFNRDSRDGAPRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgtgatgtgctgggtatggcacagaccggtagcggtaaaactgcggctttt
gctctgccattacttaataatttaaagcctgagttaaaagcaccgcagatgctggtgctg
gcaccaacccgtgagctggctgttcaggttgctgaagcctgtaatgattttgctaagcat
atgcacggcgttaatgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggagcccagatcgttgtgggtactcctggtcgtctgctggatcacttg
aaacgcggtacgctggatctgtctaacctgagtggtctggttctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgcg
catcagactgcgctgttctctgccaccatgccggaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccgcaagaagttcgcatccaatcaagcgtgactacgcgcccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcaattattttcgttcgtaccaagaacgctacgctggaa
gtggctgaagcgctggaacgtagcggttacaacagtgccgcgctgaacggtgacatgaat
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggtcgtttggatattctgatc
gcgaccgatgttgcggcgcgtggtctggacgttgagcgtatcagtctggtcgtgaactac
gatattccgatggatgccgagtcttacgtccaccgtattggtcgtaccggtcgtgctggt
cgtgcaggtcgtgctttgctgtttgtagaaaaccgcgagcgtcgtctgctgcgcaacgtt
gaacgcacaatgaagctgacgattcctgaagtggaattgccaaacgcagagttgttgggt
caacgccgtctggctaagtttgctgctaaagtacagcagcaactggaaagcagcgatctg
gacatgtaccgcgcgctgttgacgaaactgcaaccgcaggaagagttggacatcgaaacg
ctggctgccgcgctgctgaaaatggcacagggcgaacgtcctctgattctgccgccagat
ccggcagtccgtccgcgtcgtgaattccgcgatcgtgatgagtctcgtggtgattcacgt
ggcgatcgtcgccgcgatccgcgtgattcccgcgaaagccgtgacggtgaccgtccgcag
cgtcgtgaacgtcgtgatgcgggtgagatggaactgtatcgtatcgaagtaggtcgtgat
gacggtgttgaagttcgtcatattgttggtgctatcgctaacgaaggggatatcagcagc
cgttacatcggtaacatcaagctgtttggttcccactcaacgatcgaactgccgaaaggt
atgccgggcgatctgttatcgcacttcacccgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgcagtcgcacagccagagcgtcgtggcggtggtcgtcctggt
ggcgaacgtcgtgatggtgcagcgccacgtcgctctttcggcggtggtgaacgccgtgaa
ggtaacggtaacggcggtgagcgtcgcgaacgttctttcaaccgtgatagccgtgacggc
gcgccacgcgctccacgtcgtcgccctgctgacgcgtaa
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