Pectobacterium polonicum: LW347_03615
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Entry
LW347_03615 CDS
T08488
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo03410
Base excision repair
ppoo03430
Mismatch repair
ppoo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LW347_03615 (recJ)
03430 Mismatch repair
LW347_03615 (recJ)
03440 Homologous recombination
LW347_03615 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoo03400
]
LW347_03615 (recJ)
DNA repair and recombination proteins [BR:
ppoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LW347_03615 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LW347_03615 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LW347_03615 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UVO09082
UniProt:
A0AAE9T231
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All DBs
Position
801700..803463
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AA seq
587 aa
AA seq
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MNMITQLRRRPLVEDSDLPDTVPPLLRRLYAQRGVKGAQELERSLSGLLNYRLLSGIDKA
IDLLQLALAEKRCIVIVGDFDADGATSTTLAVLALRSMGGTNIKYLVPNRFEDGYGLSPA
VVAQAAALGAELIVTVDNGISSHAGVEDAHRRGISVLVTDHHLPGETLPDADAMINPNLP
DCAFPSKALAGVGVAFYLMMALFVRLRDSDWFTQPLFTQQGLAKPNLTELLDLVALGTVA
DVVPLDANNRILVAQGLNRIRAGECRPGIRALLEVANRDASQLVSSDLGFAIGPRLNAAG
RLDDMTVGVELLLSNDITQARMLANDLDALNQDRREIEQGMQVEALRLCESLERTRTELP
YGLAMYHPEWHQGGVGILASRIKERFHRPVIAFAPAGNGMLKGSGRSIAGLHLRDALERL
DTLYPGMMDKFGGHAMAAGLSLHETQFEDFRQRFGELVGEWLEPSQLEGVVWSDGELVLP
ELDLLSTAEMLRYAGPWGQAFPEPTFDGCFRILQPRLLKERHLKAMFEPIGATGTVPLLD
GIAFNIDPTIWPDPSIKEVEMVYRLDINEFRGKRSVQLLIQHLWPRA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatgattacccaactccgccggcgtccgctggtggaggatagtgatttacctgat
accgttccgcccttgctacgtcgcctctatgcgcagcgcggtgttaaaggtgctcaggag
ctggaacgtagtctgagtggtttactcaattaccgtttactcagcggcattgataaagcg
atcgacctgctgcaattagcgctggcagagaagcgctgcatcgtgattgtgggtgacttt
gatgccgatggtgccaccagcaccacgcttgccgtactggcgttgcgcagcatgggcggc
acgaacataaaatatctggtgccgaaccgttttgaagatggttacgggctaagccccgcc
gtggtggcgcaagccgccgccttgggtgcggaacttatcgttactgttgataacggaatc
tcttcccatgcaggggtcgaggatgcacatcggcgcggtatttcggtgctggtgaccgat
caccatctgccaggcgaaaccctgcctgatgccgatgcgatgattaaccctaatctgcca
gattgtgcattcccttccaaagcgctggctggcgtgggtgtggcgttctatctgatgatg
gcgctgtttgtacgcctgcgtgacagcgactggtttacgcaacccttgtttacgcaacag
gggctggcgaagccgaatctcactgaattactggatctggtggcgctgggcaccgtggcg
gacgtggtaccgctggatgccaacaaccggattctggtggctcaggggctgaatcgtatt
cgtgctggcgagtgtcgtccgggtattcgagcgctgctggaagtggctaaccgcgatgcc
agccagttggtctccagcgatttaggctttgccatcgggccgcgcctcaatgccgccgga
cggctggatgatatgacggtcggggtcgaactgctattgagtaacgatattactcaggcg
cgcatgttggctaacgatttagatgcgttgaatcaggatcggcgcgaaatcgaacaggga
atgcaggtcgaagccttgcgcctgtgcgaatccctggaacgtacccgtaccgaattacct
tacggtttggcgatgtatcaccctgagtggcatcagggcggtgtgggtattctggcttcg
cgtattaaagaacgtttccatcgcccggtgattgcctttgcacccgcaggcaacggcatg
ttgaaaggatcgggacgttccattgccggtttgcatctgcgtgatgcgctggaacgattg
gatacgctgtaccccggcatgatggataaattcggcggacacgcgatggcggcaggatta
tcgctgcatgaaacgcagttcgaggatttccgtcagcgctttggcgaattggtgggggag
tggctcgaaccctctcagcttgaaggggtcgtctggtctgatggcgagctagtgctgccg
gaattggatttgctatcaacggcggaaatgctgcgttatgcggggccgtggggacaggca
ttccctgaaccgacgtttgatggctgcttccgtattctgcaaccccgcttgctcaaagaa
cgccatttgaaagcgatgtttgaaccgatcggtgcaacaggaaccgtgccgctgttagat
ggtatcgcgtttaatattgatcccaccatctggcccgatccaagcattaaagaagtagag
atggtgtatcgactggatattaacgaatttcgcggtaaacgctcggtgcaactgttgatt
caacatttgtggccgcgcgcgtga
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