Pectobacterium polonicum: LW347_08185
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Entry
LW347_08185 CDS
T08488
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW347_08185 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoo03019
]
LW347_08185 (rhlE)
Enzymes [BR:
ppoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LW347_08185 (rhlE)
Messenger RNA biogenesis [BR:
ppoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LW347_08185 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UVO09907
UniProt:
A0AAE9T2T4
LinkDB
All DBs
Position
1836249..1837685
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AA seq
478 aa
AA seq
DB search
MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLTSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP
TKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGNRGGGGARNAAPRAQSGAPRSQSER
SERSQGQGERRSAEGNRQPRKPGGNSDSPWGTGGKGKGGGEGQRRAPRPQNRSKPADK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgcgcgattgaagagcagggt
tatcgcgatcctacccccgttcagcgtcaggcgatccctgtcgtgctggaagggcgcgat
ttaatggccagcgcccaaacgggtacgggtaaaacggcaggttttacactgccactcttg
caactgctcactagccgcgaagcgcagaataaagggaaaggacgtcgtccagtacgggcg
ctgatcctgacgccaactcgcgaactggcggcacagattgatgagaacgtgaaggcgtac
agcaaatatttacgcctgcgctcactggtcgtgtttggcggcgtgagcattaacccgcag
atgatgaagctgcgcggcggcgtggatattctggtggcgacgccgggacgtctgctcgat
ctggaacaccagaacgccgttgacctgtcacagattgaaattctggtgctggatgaagcg
gaccgtatgctggatatgggcttcattcacgatattcgccgtgtactggcgaagctgccg
actaaacgtcaaaacctgctgttctccgcgactttctcggatgagatcaaagcgctggcg
aacaaactgctgactaacccagcctcagttgaagttgtgcgtcgtaatacgccgtctgag
ctggttacgcagcacgtacattttgtcgataagcgccgcaagcgtgaactgctgtcacag
ctgattggtgaaaataactggcagcaggtgctggtctttacccgcaccaaacatggcgct
aaccatctggctgaactgttggagaaagacggtattactgccgccgctatccacggtaat
aaaagtcagggcgcgcgtacgcgtgcgctggcgaactttaaagacggcagcattcgcgtg
ctggtcgcgacggatatcgccgcgcgtggtctggatatcgaccaactgccgcacgtggtg
aactatgagttaccgaatgtgccggaagattacgttcaccgtattggccgtaccggtcgt
gcagaagcgacgggtgaagcgctgtcgctggtgtgtgtggatgaacacaagctgctgcgt
gacatcgaacgtctgttgaagcgtgaaattccgcgcattgctatcgaaggctacgagccc
gatccgtccatcaaggccgaaccgattgtaaatggtcgtcagggtaaccgtggcggtggt
ggtgcgcgtaacgcagcaccgcgtgcacaatcgggtgctccgcgcagtcagtccgagcgc
agcgaacgtagtcaaggccagggcgagcgccgttcagccgagggtaatcgccaaccgcgt
aaaccgggcggtaatagtgatagcccatgggggactggcggaaaaggcaagggcggcggt
gaaggtcagcgtcgcgcaccgcgcccgcaaaaccgcagtaagccagcggacaagtaa
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