Pectobacterium polonicum: LW347_10125
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Entry
LW347_10125 CDS
T08488
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppoo
Pectobacterium polonicum
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppoo03016
]
LW347_10125 (rnd)
Enzymes [BR:
ppoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LW347_10125 (rnd)
Transfer RNA biogenesis [BR:
ppoo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LW347_10125 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
UVO10264
UniProt:
A0AAE9NTD5
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All DBs
Position
2272580..2273704
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AA seq
374 aa
AA seq
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MNYQLITSDIGLQQVCAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLSYGFAA
LVADYMDVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRHLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPSSLGELSSLGLSGPEIRYHGKTLLDCVAQTEGIADVDCPPPVINLIDH
PGYKKAFKDIKALVQRASEQSGLSAELLASRRQINRLLNWHWKLTGQDVSTPEMLSGWRG
QLYGDELREIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacatcgggttacaacaggtctgcgcccaagcgcaa
cgctttccgcaggtggcattggacacggagttcgtcagaacccgcacgtattacccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcgcttatcgacccgttaacgatt
acagactgggcaccttttcaggcattactgcgtgacgaacaggtcactaaattcctgcat
gcgggcagcgaagatctggaagtctttctcaatacgtttggaacacttccgacgcctttc
attgatacacagattctggctgcatttttaggcaagccactttcttatggctttgctgcg
ctggtggccgactacatggacgtgacgctggataaaagtgagtctagaacggactggctt
gcccgtccactgagcgaaaaacagtgcgactatgcggccgccgatgtgttctatctgtta
ccgatggcgatccaactggtggcggacacagaagcggcggggtggatgaacgccgcgttg
gacgagtgcctcctgctttgtcagcgtaaacaggatattttggctccggcgctggcctat
cgtgaatttggcaacgcctggcaactgcgtggacggcatctggcatgtcttcagcgtttg
gctgagtggcgtttacgtaaagcgcgtgagcgggacagcgcggtgaattttgtcgtacgt
gaagagaaccttttgcaggttgcacgctgtctgccgtcttcgctgggggaactgagttct
ctggggctgagcggccctgaaatccgttatcacggaaaaacgctgctggattgtgttgcg
cagacggagggcattgctgatgtggattgcccaccaccagtcattaatctgatcgaccat
cctggctataagaaagcatttaaagatatcaaggcgttggtgcagcgcgccagtgaacag
agtggtttatccgccgaattattggcatcacgtcgtcaaattaatcgcctgctgaactgg
cactggaaattaacggggcaagatgtcagtacaccagaaatgctatctggctggcgtggt
cagttatatggcgatgaactgcgcgaaattgtgcagggctattaa
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