Pectobacterium polonicum: LW347_10535
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Entry
LW347_10535 CDS
T08488
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppoo
Pectobacterium polonicum
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppoo03032
]
LW347_10535 (topA)
03400 DNA repair and recombination proteins [BR:
ppoo03400
]
LW347_10535 (topA)
Enzymes [BR:
ppoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LW347_10535 (topA)
DNA replication proteins [BR:
ppoo03032
]
Prokaryotic type
DNA Topoisomerases
LW347_10535 (topA)
DNA repair and recombination proteins [BR:
ppoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LW347_10535 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UVO10339
UniProt:
A0AAE9NTH9
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All DBs
Position
2355686..2358286
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AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSVSKKSADSATKDKTKKKV
KKDEKSALVNRMGVDPYHGWKANYEILPGKEKVVSELKTLAENADHIYLATDLDREGEAI
AWHLREIIGGDEQRFSRVVFNEITKNAITQAFEKPDTLNIDRVNAQQARRFMDRVVGYMV
SPLLWKKIARGLSAGRVQSVAVRLIVDREREIKAFVPEEYWELHADLLAGSDIQLQMQVT
HHNGKPFKPVNKDQTHAAVSLLENARYVVADREDKPTSSKPGAPFITSTLQQAASTRLGF
GVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALTMVRGYIGEEFGKRYLPEAAAVYSSKE
NSQEAHEAIRPSDVGVLADSLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLIVEAAD
YQLRAKGRTLRFDGWTKVMPALRKNDEDRTLPSVAVGEALSLQKLLPGQHFTKPPARYSD
ASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMN
YDFTARMESRLDQVANNQAEWKAVLDEFFNEFSQQLEKAEQDPEEGGMRPNTMVLTSIDC
PTCSRQMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAETNALRAR
RRCEKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYDGPIVECEKCGSEMH
LKMGRFGKYMACTGETCSNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGV
FLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPVVDKDGNKTQVRFSRKTKQQY
VSSEKDGKATGWSAFYIDGKWVEGKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtat
ttaggcaatgactacgtggtgaaatccagcgtcggtcatgtgcgcgatttgccgacgagt
ggctcagtcagtaaaaagagcgcggactcagcgactaaagataaaacgaaaaagaaagtc
aaaaaggatgaaaaatctgcgctggttaatcgtatgggcgtcgatccttatcatggttgg
aaggctaactacgaaatactgccgggtaaggagaaggttgtctccgaactaaaaacattg
gcggaaaatgctgaccatatctatctcgcaaccgaccttgaccgcgaaggggaagccatt
gcctggcacctgcgggaaatcattggtggtgacgagcagcgttttagccgcgtggtgttt
aacgaaatcacgaaaaatgccattacgcaggcgtttgaaaaaccagacacgttgaatatc
gaccgggttaatgcgcagcaggcgcgccggtttatggatcgcgtagtgggttacatggtt
tccccgctgttgtggaaaaaaattgcccgcggtctgtcggccggacgtgtgcagtcggtt
gcggtgcgcctgattgtcgatcgcgagcgcgaaattaaagcgttcgtgccggaagaatat
tgggaattgcacgccgacttgctggcgggcagcgatattcaactgcaaatgcaggtaacg
catcacaacggcaaaccgtttaagcccgttaacaaagaccaaacgcatgcggcggtcagc
ctgcttgaaaacgcacgctatgtggttgctgaccgtgaagataaaccgaccagcagcaaa
cccggtgcgccgttcatcacatcaacgctgcaacaggctgccagtacacgcctcggcttt
ggtgtgaaaaaaaccatgatgatggcgcagcgtctgtatgaagcgggctacattacctat
atgcgtaccgactccacgaacctcagtcaggatgcgttgacgatggtgcgtggctatatc
ggcgaagaattcggtaagcgctatctgccggaggcagcagccgtctacagcagcaaagaa
aattcacaggaagcgcacgaagccattcgaccttccgatgttggcgtgctggctgacagt
ctgaaagatatggaagccgatgcgcagaagctgtatcagctgatttggcgtcagttcgtc
gcctgtcaaatgacgccagcgcaatacgattccaccacgttaattgtggaagccgctgat
tatcaactgcgtgcgaaaggccgtacgctgcgttttgatggctggacgaaagtcatgcca
gcgctgcgtaaaaatgatgaagaccgcacattgccgagtgtggcggtgggcgaagcgctg
tcgctacagaaactgctgccagggcaacacttcaccaaaccgccggcacgttacagcgat
gcctctctggttaaagagctggaaaaacgcggtattggtcgtccttcaacctacgcttcg
attatttcaaccattcaggatcgcggctatgtacgggtggaaaatcgccgtttctatgct
gagaaaatgggggaaatcgttaccgatcgcctggaagaaaacttccgcgaattgatgaat
tacgatttcaccgcacgaatggaaagccgtctcgatcaggtcgcgaataatcaggcggaa
tggaaagcagtattggatgagttcttcaacgaatttagccagcagttggaaaaggccgag
caggaccctgaagaaggcggtatgcgccccaatacgatggtgttgaccagcattgattgc
ccgacctgctctcgtcagatgggtatccgtactgccagcaccggggtgtttctgggctgt
tccggctatgcactgccgccgaaagagcgttgtaaaaccacaattaatctgataccggaa
gccgaagtgctgaacgtgttagagggtgatgaagccgaaactaacgcgttgcgtgctcgt
cgccgctgtgaaaaatgcggcacggcgatggacagctacctgattgataatcagcgtaag
ctgcacgtttgcgggaataacccagcctgtgacggatatgagatcgaagccggtgaattc
cgcatcaagggctacgatggtcctatcgttgagtgtgagaaatgtggttccgaaatgcat
ctcaaaatgggacgcttcggtaaatacatggcgtgcaccggcgaaacgtgcagtaacacg
cgtaagatcctgcgtaatggcgatgttgcgccaccgaaagaagatccagtgccgctgcct
gagctgccttgtgagaagtccgatgcgtatttcgtcttgcgtgacggtgcagcgggggtg
ttccttgcagccaatacgttcccgaaatctcgtgaaacgcgggcaccgctggtagaggaa
ctggtgcgatttaaagatcgtttgccagaaaaactgcgctatttggccgatgctccggtg
gtcgataaagatggcaataaaacgcaggtgcgtttcagccgtaagaccaaacagcaatat
gtctcgtcagaaaaagacggcaaggcaacgggctggtcggcgttttatattgacggaaaa
tgggttgaagggaagaagtaa
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