Pectobacterium polonicum: LW347_14615
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Entry
LW347_14615 CDS
T08488
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo00040
Pentose and glucuronate interconversions
ppoo01100
Metabolic pathways
ppoo02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LW347_14615
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LW347_14615
Enzymes [BR:
ppoo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LW347_14615
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_43
DUF2179
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
UVO07135
UniProt:
A0AAE9NP02
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Position
complement(3245145..3246713)
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AA seq
522 aa
AA seq
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MFRAVIGTGRLRACAVAIAFSGIALSGCDNSQQPVAETTPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTNRQELKDALNNIRSVRYIAGDSDAELQAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGADALAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSDAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFSQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGAA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKAAATSAGKTVPGWAL
ETCTNELEWSPPYVYSVGKSIAVVEKYVLENAGSGKLAISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattggaacgggtcgtttacgtgcctgtgcggtagctattgctttt
tctgggatagcactttctgggtgtgacaacagtcagcaaccagtggcagaaacgaccccg
cccgacttacaggtgaaaacggcaccgtttggttgggctgcacaatatcagaacacggat
ggtaaattttatgcgacgacgggaggtgagggcgcacatgaaaatagcatttatgtcgtt
accaatcgtcaagaattaaaagatgcgttaaataacatccgcagtgttcgttatattgca
ggcgactccgatgcggagttacaggcaaagttagaacccaagattatctattggcaaggc
actattcgtggtgatgatttaggaaatgggcgctatgcgaatgctgaggattataaaacc
aaaccgaataaaacgacgttcgattttgatttatatgttaaagcgttcgatcagaactat
atggcacaactgaaagctacggcggatgccggtggagctgatgcgttagccgccagtgca
gaacttagcctgttgaaaaaacagaatggtcagcgttcgcagtatgccaacaaccagaaa
gcacagattcaatttcaggttccgccgaataccacgattttaggtgtgggtagcgatgcg
aaactggtggaaggctacttatccctcaatacgttaagtcacacgtttggcaaaacggat
aacagcaacatcattatccgtaatattacgtttcaggcaccgcgtgattttgcccccgct
tgggatgcgggtgatggagataaaggcaactggaatgcgcgttatgattccgtgtcgatt
aatgccagcaaaaatgtctgggtcgaccactgtacctttacagacggtgaacaccctgac
tatcaggagccggtgctgttcggtaaacatatccaacgccatgatggcctactggatata
gaagatggcgccgattatctgacgatttcctacaacattttctcccagcatgacaaaacg
gtattaatcggctcaggcgacggtgataaaggggaatatcggatcacttttgaaggcaat
ttgtgggacaacagcgtgcagcgttcgccgcgagtgcgctttggtcaggtgcatttactt
aataactaccaccgtggcgcaacggatacaaattaccccattctgtatgccattgggatg
ggcttcgattcatcgattctttccgaaagtaatgtttttaatttccagggcggtgcggca
gacgaaaagctgattattggtgcctacaagggaagtaaatttaaagacaacggttcctgg
ttcaatggcaatccggcaagtaatctgaatcaaattgccttggataaatgtagtgcattg
caagaaaccgagaaagccgccgctacaagcgctggaaaaacagtaccgggatgggcgttg
gagacctgcaccaatgaattggagtggagcccaccttatgtctatagcgttgggaaatct
atcgccgtcgttgagaaatatgttctggaaaatgccggctctgggaaattggctatctcc
ctcccgtag
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