Pectobacterium polonicum: LW347_20245
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Entry
LW347_20245 CDS
T08488
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW347_20245 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoo03019
]
LW347_20245 (recQ)
03400 DNA repair and recombination proteins [BR:
ppoo03400
]
LW347_20245 (recQ)
Enzymes [BR:
ppoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LW347_20245 (recQ)
Messenger RNA biogenesis [BR:
ppoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LW347_20245 (recQ)
DNA repair and recombination proteins [BR:
ppoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LW347_20245 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UVO08138
UniProt:
A0AAE9SX33
LinkDB
All DBs
Position
complement(4481255..4483081)
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AA seq
608 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLY
IAPERLTTDSFLDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADETTRNDIVRLLDLHSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQGQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIRDFGHDKLPVYGIGKEKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTESARPVLRGEVPLQLAVPRVINLKPRTNQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMSELMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctacgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacactcagtggg
caggactgtctggtcattatgccgacaggtggcggtaaatcgctgtgctaccaaatccct
gcgctggtgatggacgggctgacgctggtggtgtctccactgatttcgctgatgaaagat
caggtcgatcagcttcaggcctacggtgtttcggcagcttgccttaattcgacgcagaca
cgcgaacagcagcttgaggtgatggcaggttgtcgtaccggtcagatcaagctgctttat
atcgcccccgaacgcctgacaacggacagtttcctcgatcaccttgcccactggcagatc
tcactgatcgccgtggatgaagcgcactgtatttcccaatggggacacgattttcgccct
gaatatcgcgcactggggcagattaaacagcgtttccctcatcttccttttattgcactg
acggccaccgccgatgagaccacgcgcaacgatatcgttcgcctgttggatcttcattcg
ccgctgattcagatcagcagctttgaccgcccgaatattcgctacacgctggtggagaag
ttcaaaccgctcgatcagctctggatgttcgtgcaggggcagcgtggcaaaagcggcatc
atttactgtaatagccgctcccgtgtggaagacatcagcgcacgtttgcaggcgcgtggg
ctgagtgcgggggcgtatcacgccgggttggacaatgaacggcgcgcacaggtacaggaa
gcgttcctgcgcgacgatctccaggtggtggtagcgaccgtcgcctttggtatgggcatc
aacaagcctaacgtgcggtttgtggtgcactttgatattccgcgcaacatcgaatcctac
tatcaggaaacggggcgagctggacgtgatggcctcgccgccgaagcggcactgttctac
gacccggcggatatggcgtggttgcgccgttgtctggaagagaaaccggctgggccacag
ttggatattgaacgtcataagctcaatgcgatgggcgcatttgccgaagcgcaaacctgc
cgccgtctggtactgctgaactatttcggtgaaggacgccaagaggcctgcggcaactgc
gatatttgtctcgatccgccgaagcgctatgacgggttagtagaggcgcaaaaagcgctt
tcctgcgtataccgcgttgggcagcgttttggtctggggtatatcgtcgaggtgctgcgc
ggggcgaataaccagcgtatccgtgacttcggccatgacaaactgccggtttacggcatt
ggtaaagagaaatcgcaagaacattgggtcagcgtgctgcgccagttgattcatctgggt
ttactgaaccagaacattacgatgcattctgccgtacagcttaccgaatctgcgcgtccg
gtattgcggggagaagtgccgctgcaactggccgtgccgcgtgtgattaacctgaaaccc
cgcacgaatcaaaaatcttatggcgggaattacgaccgtaagctgtttgccaaattgcgc
aaactgcgtaaatccatcgcggatgaggacaatattccgccttatgtggtgttcagcgat
gccacgctgctagagatgtcggaactgatgccgatcacggcgggtgagctgctgaatatc
aacggggtcggtcatcgcaaacttgaacgtttcggtgcgcctttcatgaacatgatccgc
gatcatgtcgataatgatgacgagtga
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