Pectobacterium polonicum: LW347_20500
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Entry
LW347_20500 CDS
T08488
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LW347_20500 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoo03021
]
LW347_20500 (rho)
03019 Messenger RNA biogenesis [BR:
ppoo03019
]
LW347_20500 (rho)
Transcription machinery [BR:
ppoo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LW347_20500 (rho)
Messenger RNA biogenesis [BR:
ppoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LW347_20500 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
UVO08183
UniProt:
A0AAE9SX47
LinkDB
All DBs
Position
complement(4536017..4537276)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDRPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattactcttggcgaaaat
atgggactggaaaaccaggcccgcatgcgtaaacaggatattatcttcgcgattctgaag
cagcatgccaaaagcggcgaggatattttcggcgatggcgtgctggagatattgcaggat
ggtttcggctttctccgctccgcagacagctcctacctcgcaggccccgatgatatctac
gtttctcccagccaaatccgccgtttcaacctccgcactggtgacaccatttcgggcaag
attcgcccgccgaaagaaggtgagcgctattttgccctgctgaaagttaacgaagttaac
tacgacagacctgaaaacgcccgcaacaaaatcctgttcgaaaacttaacaccactgcat
gcaaactctcgtttgcgtatggagcgtggtaacggttcgacagaagatttgacggcgcgt
gtactggatctggcttcgccaattggtcgtgggcaacgtggtctgatcgttgcgccgccg
aaagcaggtaaaaccatgctgctgcagaatattgcgcagagtattgcttacaaccatcct
gactgtgtgctgatggtgctgctgattgacgaacgcccagaagaagtgaccgagatgcag
cgtctggtgaaaggtgaagtggttgcgtcaacgtttgacgaaccggcttcccgtcacgtt
caggttgctgaaatggtgatcgaaaaagcgaagcgtctggttgaacataagaaagacgtt
atcatcctgctggactccattacccgtctggcacgtgcttataacaccgtggtgccggcg
tcgggcaaagtgttgaccggtggtgtggatgctaacgccctgcatcgtccgaagcgtttc
ttcggtgctgctcgtaacgttgaggaaggcggtagcctgaccatcatcgccaccgcgctg
gttgataccggttctaagatggacgaagtgatttacgaagaatttaaaggtacaggtaat
atggaactgcacctggcgcgtaaaatcgcagaaaaacgcgtgttcccagcgattgattac
aaccgctccggtacgcgtaaagaagagttacttactacctctgaagaattgcagaagatg
tggattctacgcaaaatcatccacccaatgggtgaaatcgatgcgatggaattcctcatc
aacaagttggcgatgacaaaaaccaacgacgaattcttcgatatgatgaaacgttcataa
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