Pseudodesulfovibrio portus: JCM14722_02990
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Entry
JCM14722_02990 CDS
T08636
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor02020
Two-component system
ppor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JCM14722_02990 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JCM14722_02990 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppor03021
]
JCM14722_02990 (rpoN)
Transcription machinery [BR:
ppor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JCM14722_02990 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
BDQ32757
LinkDB
All DBs
Position
complement(304593..306002)
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AA seq
469 aa
AA seq
DB search
MGLELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLETVQQELMENPFLDELETEAEVHD
SSEKLTESQAEEELVRNADWENYLGEFSSTSKQATARDAEVPEDGLSFEARLASKPSLEG
HLNWQMRLSNFTDQEIAISEIILGNLDTNGYLQASVDEIRLMVQASAEEVEDLLMRIQRL
DPVGVGARTPQECLLVQMEVLGLDDPILVSLVKDHLEDLEKNRYKPLARKFKLSMDELKE
YLDLLQTLDPMPGTNFSSNEPHYVSPDVYVYRYGEDFVIILNEDGLPRLQMNTFYMDSMK
GAADKEKEYFQEKMRSAAWLMKSLYQRQRTLYKVVESIVRFQREFFIDGVTKLKPLILKE
VAEDIEMHESTVSRITTNKYVSTPHGIYELKFFFNSALDLDDGSQVGSESVKALIKQMIA
GEDTKKPLSDERIGEILKDKLEVNIARRTVAKYRSAMGIPSSSKRKQYF
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggtttggaactcaggcaacaactcaaactttcccagcaactggtcatgacgccgcag
ttgcagcaggctatcaagctgctgcagttgtctcgtttggagctgcttgaaaccgtgcag
caggaactcatggagaacccgtttctcgatgagttggaaaccgaagccgaagtgcacgat
tcctcggagaagctgaccgaatcccaggctgaagaagaactggtgcgcaatgcggactgg
gagaactatctgggcgaattttccagcacgtccaagcaggccacggcccgtgatgccgaa
gtcccggaggacggcctctccttcgaagcccgcctggcgtccaagccctcccttgaaggc
cacctgaattggcagatgcggctatccaattttaccgaccaggagatcgccatcagcgag
atcatcctgggcaatctcgacaccaacggctatcttcaggcgtcggtggacgagatacgg
ctgatggtccaggcttccgcagaggaagtcgaggacttgctgatgcgtatccagcgcctg
gacccggtcggggtcggcgcccgtactccacaggagtgtcttctcgtccagatggaagtt
ctcggcctcgatgatccgatcctggtctccctggtcaaggaccatctggaggacctggag
aagaaccgctacaagcccctggcccgcaagttcaagttgtccatggacgagctcaaggag
taccttgacctcctgcagacgctggaccccatgccgggcaccaatttttccagcaacgag
cctcattacgtcagcccggacgtgtatgtttaccgatacggagaggatttcgtcatcatc
ctgaatgaggatggcctgccccggttgcagatgaacaccttttacatggattccatgaaa
ggggccgccgacaaggaaaaggaatatttccaggaaaagatgcgttctgctgcatggctc
atgaaaagcctgtaccagaggcagaggacgctgtataaagtagttgagagcattgtccgc
tttcagcgggaattcttcatcgatggcgtgacaaagctcaaaccattgattctcaaggag
gtggccgaggatatcgagatgcatgaatccaccgtcagtcgtatcactaccaacaagtac
gtctcgacgccgcacgggatctacgaactgaagttcttcttcaattcggccttggatctt
gatgacggttcccaggtgggttcggagagcgtcaaggcgctcatcaagcagatgatagca
ggtgaagatacgaagaagccgctgagtgatgaacggatcggtgaaatcctcaaggacaag
ctcgaggtgaacatcgcccggcgcacggtcgccaagtatcgctcggccatgggcatccct
tcgtcttccaaacgcaagcagtatttctaa
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