Pseudodesulfovibrio portus: JCM14722_08130
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Entry
JCM14722_08130 CDS
T08636
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppor
Pseudodesulfovibrio portus
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppor03016
]
JCM14722_08130
Enzymes [BR:
ppor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JCM14722_08130
Transfer RNA biogenesis [BR:
ppor03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JCM14722_08130
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BDQ33271
LinkDB
All DBs
Position
850604..852658
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AA seq
684 aa
AA seq
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MAKKTILGPTVRPGTVVEFMHGDQPQLAWVLEESSGRLRLLTINKREMKLPAARLLPWQG
PVLNAEASRQDIQNALNDHQEKRGEIQAGLDVMELWDLAQGEMESAPLEWFADLLWEDPD
DDQVAALGRAMLQAKTHFKFRPPNFEIWSAETVELKMRQKAEEKEREAVTSAGQVLLQAL
WTAYGQGSKPKLPDMAPELEESLSGILKRKIGDRLDETERKIWTAISKGLPDLPHLPLLL
AQTWDILPVHHNYLLDEADYTWEDSWSESFSNEIKEIENTFSNQSETPEVEDLISIDAAT
TRDIDDAFSIRRDGDGYVVSIGLARPDAHWEFGSELDKAVMYRATSLYLPEGTSHMMPAR
FGTGLYSLIAGETRPALVTDFRLDGSGKLISVTPRPTWVRVAANITYEAADAAIENRTDE
SLVLAHELAEKLLALRIEDGACIIRKPEPIITLEGEGAQTTVDITLKEQCPLSELIISEF
MILANSGLAAWAGENGVPLLHRTQDIALPPEAAGMFTEPVEIMQVVKLLLPPSLETTPRR
HAALGVAVYSPITSPLRRYTDFINMAQVCTFLADGSPRLDKEGLDQMAIYLGMRIQAVSA
VQRFRPRYWKLVHLAARRKEYQSAVVVDEAGPMATLAMPHLQVNVRSPKKLLGDKLYPGQ
RFQINFARVDPLTNEIRLSEALEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaccatactcggccccacggtccgccccggaacggtggtggaattcatg
cacggcgaccagccccagcttgcctgggtgctggaggaatcgtccggcaggctcaggctg
ttgaccatcaacaagcgcgaaatgaagctgcccgccgcccgcctcctgccttggcagggg
ccggtcctcaacgccgaggcctcgcgccaggatatccagaacgccctgaacgatcaccag
gagaaacgcggcgaaatccaggccggactcgacgtcatggaactctgggacctggctcag
ggcgagatggagtccgcgccgctggagtggttcgcggacctgctctgggaagacccggac
gacgaccaggtggccgcactgggccgggccatgctccaggccaagacccatttcaagttc
cgccccccgaatttcgagatatggtccgccgagaccgtggaactcaagatgcggcagaag
gccgaggaaaaggaacgggaggccgtgacctccgcagggcaggtcctgctccaggccctc
tggaccgcatacggccagggaagcaagcccaaactgccggacatggcccccgagcttgaa
gagagcctgtccgggattttgaagcgcaagatcggcgaccggctggacgagaccgagcgc
aagatctggacggccatctccaagggactgcccgacctgccccacctccccctgctcctg
gcccagacatgggacatcctccccgtccaccacaactacctcctggatgaggcggactat
acttgggaagattcatggtcggaatccttttccaatgaaatcaaggaaatagaaaacaca
ttttccaatcagtccgaaactcccgaagtcgaagacctcatctccatagacgcggccacc
accagagacatcgacgacgccttcagcatccgcagggacggcgacggatacgtagtctcc
atcggcctggcccgcccggacgcgcactgggagttcggctccgaactggacaaggcggtc
atgtaccgggccaccagcctgtatctgcccgaaggcaccagccacatgatgccggcccgg
ttcggcaccgggctttacagcctcatagccggggaaacccgtccggcgctggtcacggac
ttccgccttgacggaagcggcaagctcatttccgtcacgccccgcccgacctgggtcagg
gtggcggcgaacatcacctatgaggctgcggacgcggccatcgaaaaccggaccgacgaa
tccctggtcctggcccacgagctggccgagaagctcctcgccctccgcatcgaggacggc
gcatgcatcatccgcaagcccgagccgatcatcacccttgaaggcgaaggcgcgcagacc
acggtggacatcaccctcaaggagcaatgcccgctctcggaactgatcatcagcgaattc
atgatcctggccaactcgggcctggccgcatgggccggggaaaacggcgtcccgcttctg
caccgcacccaggacatcgccctgcccccggaggccgcgggcatgttcacggagcccgtt
gagatcatgcaggtggtcaagctgctcctgccgccctccctggagaccaccccccggagg
cacgcggccctcggcgtagcggtatactcgcccatcacttcgcccctgcggcgctacacg
gatttcatcaacatggcccaggtctgcacctttctcgcggatggctccccccgcctggac
aaggaagggctggaccagatggccatatacctgggcatgcgcatccaggctgtgagcgcg
gtccagcggttccggccccggtactggaagctcgtccacctcgcggcgcgacgcaaggaa
taccagtccgccgtggtggtggacgaagccggtcccatggccaccctggccatgccccac
ctgcaggtcaacgtccgttcgcccaagaagcttctcggcgacaagctctacccgggccag
cggttccagatcaatttcgcccgggtcgaccccctgaccaacgaaatccggctctccgag
gccctggaagaatag
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