Pseudodesulfovibrio portus: JCM14722_12530
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Entry
JCM14722_12530 CDS
T08636
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor00260
Glycine, serine and threonine metabolism
ppor00460
Cyanoamino acid metabolism
ppor00630
Glyoxylate and dicarboxylate metabolism
ppor00670
One carbon pool by folate
ppor00680
Methane metabolism
ppor01100
Metabolic pathways
ppor01110
Biosynthesis of secondary metabolites
ppor01120
Microbial metabolism in diverse environments
ppor01200
Carbon metabolism
ppor01230
Biosynthesis of amino acids
ppor01240
Biosynthesis of cofactors
ppor04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
JCM14722_12530 (glyA)
09102 Energy metabolism
00680 Methane metabolism
JCM14722_12530 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
JCM14722_12530 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
JCM14722_12530 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
JCM14722_12530 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
JCM14722_12530 (glyA)
Enzymes [BR:
ppor01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
JCM14722_12530 (glyA)
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Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
BDQ33711
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All DBs
Position
complement(1345491..1346729)
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AA seq
412 aa
AA seq
DB search
MEELLIQDPAVAAAIADEVDRQVSKLELIASENFVSTAVRQAQGSVMTHKYAEGYPGKRW
YGGCEFVDEVEDLARDRAKEIFGAAYANVQPHSGSQANMAVYFAACKPGDTVLGMDLSHG
GHLTHGSPVNFSGKLFNMVHYGVSRETQTIDYDQVEALAKEHKPTMIIAGASAYPRIIDF
ARFRQIADEVGAKLMVDMAHIAGLIAAGEHPSCIEHAHYTTTTTHKTLRGPRGGMILGAE
DLEQELNSNIFPGIQGGPLMHVIAAKAVAFGEALSPGFVEYQQQVVKNAKQLAASLTEAG
YNLVSGGTDNHMMLLDLSEKDYTGKDAQIALDKAGITANKNTIPFETKSPFQTSGIRLGT
PALTTRGMIEEDMIVVAEAIVAALNNMNDEKVLEEISNEVEEFAREFPLFAW
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactgcttatccaggatccggcggttgccgccgccatcgccgacgaggtggac
cgccaggtctccaagctggaactcattgccagcgaaaatttcgtatccacggccgtgcgc
caggcacaggggtcggtcatgacccacaaatacgccgaaggctaccccggcaaacggtgg
tacggcggctgcgagttcgttgacgaggtcgaggacctggcccgcgaccgcgccaaggag
attttcggcgcggcctatgccaacgtccagccccactccggctcccaggccaacatggcc
gtctacttcgcggcctgcaagcccggcgacaccgtgctcggcatggacctgtcccacggc
ggccacctgacccacggctccccggtcaacttctcgggcaagctgttcaacatggtgcac
tacggcgtgtcccgcgagacccagaccatcgactacgaccaggtcgaggcgctggccaag
gagcacaagccgaccatgatcatcgcgggcgcgtccgcctacccgcgcatcatcgatttc
gcccgcttccgccagatcgccgacgaggtcggcgccaagctcatggttgacatggcccac
atcgccggtctcatcgcggcgggcgagcacccgtcctgcatcgagcacgcccactacacc
accaccacgacccacaagaccctgcgcggcccgcgcggcggcatgatcctgggtgccgag
gacctggagcaggagctcaactccaacatcttccccggcatccagggcggcccgttgatg
cacgtcatcgcagccaaggccgttgccttcggcgaggccctgtcccccggtttcgtcgag
taccagcagcaggtcgtcaagaacgccaagcagttggccgcctccctgaccgaggccggt
tacaatctggtttccggcggcaccgacaatcacatgatgctgctcgacctgtccgaaaag
gactataccggcaaggacgcccagatcgccctggacaaggcgggcatcaccgccaacaag
aacaccatcccgttcgagaccaagtccccgttccagacctccggcatccgcctgggcact
cccgccctgaccacccggggcatgatcgaagaggacatgatcgtggtcgccgaagccatc
gtggccgcgctcaacaacatgaacgacgaaaaggtgctcgaggaaatctccaatgaggtc
gaggaattcgctcgcgaattcccgctcttcgcctggtag
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