Pseudodesulfovibrio portus: JCM14722_15040
Help
Entry
JCM14722_15040 CDS
T08636
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM14722_15040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppor03019
]
JCM14722_15040
03009 Ribosome biogenesis [BR:
ppor03009
]
JCM14722_15040
Enzymes [BR:
ppor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JCM14722_15040
Messenger RNA biogenesis [BR:
ppor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JCM14722_15040
Ribosome biogenesis [BR:
ppor03009
]
Prokaryotic type
rRNA processing factors
JCM14722_15040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CENP-Q
Motif
Other DBs
NCBI-ProteinID:
BDQ33962
LinkDB
All DBs
Position
1594368..1595837
Genome browser
AA seq
489 aa
AA seq
DB search
MTAKKKRQKMFISVLPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQ
AAFINYGAERNGFLQIDEVHPEYYMGSPATKKGQRYPLMQKVLKPGQEVLVQVVKEPTGK
KGAFLTSYLSLPGRSFVYTVGRSQMGVSRKIEDEKERVRLKKVLEAFETTEGVGLIARTA
AVGQSKAALERDYKYLNRLWTDIRANAQKEKAPSIVYKELGLAARAVRDYLTADVTEVWV
DDKETFEQIRKFVKLAFPRKNNFVRLHEDPDLSLLERFNLVRQVEEIYSREATMPSGGRL
VFDATEALTAVDINSGKIGGERNFQKMALKTNVEAAREIARQLRLRDIGGQVVIDFIEMK
NPKDCREVEKVMRAEMKNDRARTDVSRISSFGLMELVRQRLGSSAIAISTEPCPCCRGTG
IRRNMEWQAMQALKTIHREIRKPGEDRVEHLCEEELAIYLLNNKRGILADLETRYGKEIH
VDIDYEYED
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaaaaagaaacggcagaagatgttcatctccgtactgccgggagaacaggta
gaggtcgtcattgccgaagaaggcaaggttaacgagtactacgtcgagatggtgcaccag
gccaagaccaagggcaacatctacaagggctacatccacaacatcgacaacgggctccag
gccgcgttcatcaactacggggccgagcgcaacgggttcctccagatcgacgaggtccat
ccggaatactacatgggcagcccggccaccaagaagggccagcgctacccgctcatgcag
aaggtgctcaagcccggccaggaagtcctggtccaggtggtcaaggaacccaccggcaag
aagggcgcgttcctgacctcctatctttctctgcccggacgcagcttcgtctacaccgtt
ggccgctcccagatgggcgtgtcccgcaagatcgaggacgagaaggagcgcgtccgcctc
aagaaggtgctcgaagccttcgagaccaccgagggcgtgggcctcatcgcccgcaccgcc
gccgtgggccagtccaaggcggccctcgagcgcgactacaaatacctgaaccggctgtgg
accgacatccgggccaacgcccagaaggaaaaggccccgtccatcgtctacaaggagctg
ggcctggccgcgcgggccgtgcgcgactacctgaccgccgacgtcaccgaggtctgggtg
gacgacaaggaaaccttcgagcagatccgcaagttcgtgaagctcgccttcccgcgcaag
aacaacttcgtccggctgcacgaggaccccgacctgtcgctgctggagcgcttcaacctg
gttcgccaggtggaggagatatactcccgcgaggccaccatgccctccggcggcaggctg
gtcttcgacgccaccgaggccctgaccgccgtggacatcaactccggcaagatcggcggg
gaacgcaatttccagaagatggcgctcaagaccaacgtggaagccgcccgcgagatcgcc
cgccagctcaggctgcgggacatcggcggccaggtggtcatcgacttcatcgagatgaag
aaccccaaggactgccgcgaggtggaaaaggtcatgcgcgccgagatgaagaacgaccgc
gcccgcaccgacgtgtcgcgcatctcctccttcggcctcatggagctggtccgccagcgc
ctcgggtcctcggccatcgccatctccaccgagccctgcccctgctgcaggggcaccggc
atccgccgcaacatggaatggcaggccatgcaggccctgaagaccatccaccgcgaaatc
cgcaaacccggcgaagaccgcgtggagcacctgtgcgaagaagagctggccatctacctc
ctcaacaacaagcgcggcatcctggccgacctggaaacccgctacggcaaggaaatccac
gtggacatcgactacgagtacgaagactag
DBGET
integrated database retrieval system
