Pseudodesulfovibrio portus: JCM14722_18210
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Entry
JCM14722_18210 CDS
T08636
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppor
Pseudodesulfovibrio portus
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppor03032
]
JCM14722_18210 (gyrB)
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_18210 (gyrB)
Enzymes [BR:
ppor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JCM14722_18210 (gyrB)
DNA replication proteins [BR:
ppor03032
]
Prokaryotic type
DNA Topoisomerases
JCM14722_18210 (gyrB)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JCM14722_18210 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BDQ34279
LinkDB
All DBs
Position
1933186..1935582
Genome browser
AA seq
798 aa
AA seq
DB search
MSEQYNAESITVLEGLEAVRKRPAMYIGSTDIRGLHHLVYEVIDNSIDEAMAGYCDKIKV
TLHMDNSCTVTDNGRGIPVDIHPKEGVPAVQLAMTTLHAGGKFDSETYKVSGGLHGVGVS
CVNALSEFMETTVRREGKTYRMKFERGHVVQELEETGTSDHSGTSQRFRPDEEIFEVNQF
DYDVLRKRFKELAYLNSGLEIEFKDERNPEAEAETFKFDGGIKRYVKDLNSNLQTIGEIV
YGEGESENMIVEFALQYTSSYKENTYTFANNIRTIEGGTHLAGYKTALTRAINNYVQNAD
LPKKLIQKLTGDDVREGLTSVISVKLPEPQFEGQTKTKLGNSEAAGLVAAVIYEKLNVFF
EENPKEARFIIEKVVDAARAREAARKARDLVRRKGALSDNALPGKLADCQSKDPKDSEIF
IVEGDSAGGSAKQGRDPKIQAILPLRGKILNVEKTRLDKMLGNKEIRAMITAFGIGIGQD
EEEKDYDKLRYYKIVIMTDADVDGSHIRTLLLTFFFRQYEELINRGHVYIAQPPLYRAHK
GKFEKFIKDDVELDNFLLERIGGDLSIKSASGRVFEGDKLLDIMAKIRFLRTKFGEAETV
GIEPTLYKKLLDYPERISFTYFEEHDPEQFKKDFETNGYRVHIEKEHDQELDKDRTYLVF
ENENGHRTRLAMEFFYSKLYKTAYATHGELKDICGGFEFTLDLKEAEKPVTGLFKLYDEV
IEEANRGWSIQRYKGLGEMNPEQLWETTMDPEKRIMLQVTIEDAAAANDIFMDLMGDNVE
PRREFIEKNALAVQELDI
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagtacaacgccgaatcaattaccgtactcgaggggcttgaggccgttcga
aaacggcccgccatgtacatcggttccaccgatatccgtggcctgcatcacttggtttac
gaagttatcgacaactccatcgatgaggccatggccgggtattgcgacaagatcaaggtc
accctgcacatggacaactcctgcaccgtgaccgacaacggccgcggcatccccgtggac
atccaccccaaggaaggcgtcccggcggtccagctggccatgaccaccctgcacgcgggc
ggcaagttcgattccgagacctacaaggtgtccggcggcctgcacggcgtgggcgtgtcc
tgcgtcaacgccttgtccgagttcatggagacaacggtccgccgcgagggcaagacctat
cgcatgaagttcgagcgcggccatgtggtccaggaactggaagagaccggcacctcggac
cactcgggcaccagccagcgattccgcccggacgaggaaatcttcgaggtcaaccagttc
gactacgacgtgctcaggaagcggttcaaggagctggcctacctgaactccggcctggag
atcgagttcaaggacgagcgtaaccccgaggctgaagccgagaccttcaagtttgatggc
ggcatcaagcgctacgtcaaggacctgaactcgaacctgcagaccatcggcgagatcgtc
tacggcgagggcgagtccgaaaacatgatcgtggagttcgccctccagtacacctcgtcc
tacaaggaaaacacctacacgttcgccaacaacatccggaccattgagggcggcacccac
ctggccggttacaagaccgcgctgactcgggccatcaacaactacgtccagaacgcggac
ctgcccaagaagctgatccagaagctgaccggcgacgacgtgcgcgaagggttgacctcg
gtcatctcggtcaagctgccggaaccgcaattcgagggccagaccaagaccaagctcggc
aactccgaggctgcgggcctggtggcggcggtcatctatgaaaagctgaacgtctttttc
gaggaaaatcccaaggaggcgcggttcatcatcgaaaaggtggtggatgcggcccgggcg
cgcgaggcggcccgaaaggcccgggacttggtccgccgcaagggcgccctgtccgacaac
gccctgcccggcaagctggccgactgccagtccaaggaccccaaggattccgaaatattc
atcgtcgagggtgactccgcaggcggttcggccaagcagggccgcgaccccaagatccag
gccatcctccccctgcgcggcaagatcctcaacgtcgagaagacgcgcctggacaagatg
ctcggcaacaaggaaatccgggccatgatcacggccttcggcatcggcatcggccaggac
gaagaagaaaaggattacgacaagctgcgctattacaagatcgtcatcatgactgacgcc
gatgttgacggctcgcacatccggacgctgctgctgaccttcttcttcaggcagtacgaa
gagctgatcaaccggggccacgtgtatatcgcccagccgccgctctaccgcgcgcacaag
ggcaagttcgagaagttcatcaaggacgacgtggagctggacaacttcctgctcgagagg
atcggcggcgacctgtccatcaagtccgcatccggccgggtcttcgaaggcgacaagctc
ctggacatcatggccaaaatccgcttcctgcgcaccaagttcggcgaagccgagaccgtg
ggcatcgagccgaccctctacaagaagctcctggactacccggaacggatctccttcacc
tacttcgaagagcacgatcccgagcagttcaagaaggatttcgagaccaacgggtaccgg
gtccacatcgagaaggaacacgatcaggaactggacaaggaccgcacctatctcgtcttc
gaaaacgagaacggccaccgcacccggctggccatggagttcttctactccaagctctac
aaaacggcctatgcgacccatggagagctcaaggacatctgcggcgggttcgagttcacc
ctggacctgaaagaggcggagaagcccgttaccggcctttttaagctgtatgacgaggtc
atcgaagaggcgaatcgtggctggtccatccagcgctacaagggtctgggcgaaatgaat
ccggaacagctttgggaaaccaccatggacccggagaagcggatcatgcttcaggtgacc
atcgaggatgcggctgcggccaacgacatctttatggatctcatgggcgacaatgtggag
cccaggcgtgaattcattgagaaaaatgcactggctgtgcaggaactggatatctaa
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