Pseudodesulfovibrio portus: JCM14722_18430
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Entry
JCM14722_18430 CDS
T08636
Symbol
nfo
Name
(GenBank) putative endonuclease 4
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM14722_18430 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_18430 (nfo)
Enzymes [BR:
ppor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
JCM14722_18430 (nfo)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
JCM14722_18430 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
HpaB_N
Motif
Other DBs
NCBI-ProteinID:
BDQ34301
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All DBs
Position
1953228..1954073
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AA seq
281 aa
AA seq
DB search
MFLGAHMSIAGGLHMAFDRIRQVGGTALQIFTRNQRQWKIPALTGYDVELFGVAREQWGN
YPIAAHDSYLINLASDQEEQEKRSLLSFAEELKRIEVLNIPYLVTHPGSHLGRGVDAGVA
RYAANLDRAIERSGTETGMVLLETTAGQGTNLGSTFEELAAIIAASRHPERLGVCYDTCH
TFAAGYDIRTPEAYAATFDAFDRTVGLDRLKFFHLNDSKTDFDSRRDRHEHIGKGAIGLD
GFRNLMRDPRFKDVPKTLETPKDKDLEDDIRNLSILRELAK
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgttccttggtgcgcacatgtccattgccgggggcctgcacatggccttcgaccgtatc
cgccaggtgggcggcacggccctgcagatattcacccgcaaccagcggcagtggaagatt
ccggcgctgaccggatacgacgtggaactcttcggcgtcgcccgggagcaatggggaaac
tacccgattgccgcccacgattcctatctgatcaatctggcctccgatcaggaagagcag
gaaaagcgctccctcctctcctttgccgaggaactcaagcgcatcgaggtgctcaacatc
ccctacctggtcacccatcccggttcgcatctgggccggggcgtggacgcgggcgttgcg
cgctatgccgccaacctggaccgggccatcgagcggtccggtacggaaacgggcatggtc
ctgctcgagaccacggccggtcagggcaccaacctcggctccaccttcgaggagttggcg
gccatcatcgcggcgtcgcgccaccccgagcgtctgggcgtgtgctacgacacctgccac
acctttgccgccggatacgacatccgcacgcccgaggcctacgccgccaccttcgacgcc
tttgaccgcaccgtcgggctcgaccggctcaagttctttcacctcaacgactccaagacc
gatttcgattcccgccgcgaccgccacgagcacatcggcaagggggccatcggcctggac
ggcttccgcaacctcatgcgggacccccggttcaaggacgttcccaagaccctggaaacc
cccaaggacaaggatctcgaagacgatatccgcaatctctccatcttgcgcgaactggca
aaatag
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