Pseudodesulfovibrio portus: JCM14722_20370
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Entry
JCM14722_20370 CDS
T08636
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM14722_20370 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppor03019
]
JCM14722_20370 (recQ)
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_20370 (recQ)
Enzymes [BR:
ppor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM14722_20370 (recQ)
Messenger RNA biogenesis [BR:
ppor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JCM14722_20370 (recQ)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JCM14722_20370 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
Motif
Other DBs
NCBI-ProteinID:
BDQ34495
LinkDB
All DBs
Position
complement(2147019..2149184)
Genome browser
AA seq
721 aa
AA seq
DB search
MFGFTDFIGLQEPIIDQVMSGGDALVLMPTGGGKSLCYQIPSMLRRGVGVCVSPLIALMQ
DQVQGLTQMGVRAACLNSALDPNTAYDIERMLENGQLDLLYVAPERLCKPGFLDFLAKCN
PALFAIDEAHCVSQWGHDFRPEYTQLSILKERFPDVPRLALTATADKPTQADIVRNLQLE
NAQTFATGFDRPNITYSVVPKKNANSMLKRFIRDNHPQDAGIVYRLSRKKVEQTAEFLCR
EGYNALPYHAGMSAADRARNQDRFMREEGVIMVATIAFGMGVDKPNVRFVCHLEPPKSLE
AYHQETGRGGRDGLPASAWMCFGMQDIAVMRAMIDAGEANETRKRVEHSKLASLFAFLET
ASCRRQALLGYFGEHIEPCGNCDNCLSPVETWDGTEAAQKALSNIFRTEQRFGVNYLAQV
LAGADNDRIRRFGHDQVSTFGIGTEMSQDQWKSVYRQLLAAGLCSVDLDRFNALTLNERS
WPVLKGEQTVRLRTDPVLPKASKKKKRRVPAMAEDVLTSWEAEALFEALRDLRLNVAEEQ
GVPPYAIFADKTLLELVRYRPANLEDFGCIPGVGLNKLNHYGETFLDCMKTHEAEHGRPA
GVPEIPEELREKLEKKKTKKFELSATEEKTLELFNRHGDVDRVAEVRGLKPPSIWKHLAQ
AATLGRLDYRAVVDLTDGEIDLILSSIKSFEAKGIVSMTPVYETLNKQYSYEMLRFLKAS
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgggttcaccgactttatcgggctgcaggagccgatcatcgatcaggtcatgtcc
gggggcgacgcccttgtgctcatgcccacgggcgggggcaagtccctgtgctaccagatt
ccctccatgctgcgccgtggggtgggcgtgtgcgtgtcgccgctcatcgcgctgatgcag
gaccaggtgcaggggctgacccagatgggcgtgcgcgcggcctgcctgaactccgcgctc
gacccgaacacggcctacgacatcgagcgcatgctggaaaacgggcagctcgacctgctg
tacgtggccccggagcggctgtgcaaacccggcttcctcgacttcctggccaagtgcaac
ccggccctgttcgccattgacgaggcgcactgcgtgtcccagtgggggcacgatttccgg
cctgaatacacgcagctttccatcctcaaggagcggttccccgacgtgccgcgcctggcg
ctcacggccacggcggacaagcccacccaggcggacatcgtgcgcaacctgcaactggag
aacgcgcagacgttcgccaccgggttcgaccggcccaacatcacctactccgtggtgccc
aagaagaacgccaactccatgttgaagcggttcatccgggacaaccatccccaggacgcg
ggcatcgtctaccggctctcgcgcaagaaggtggagcagacagcggaatttctgtgcagg
gaaggatacaacgccctgccctatcacgcgggcatgtcagccgcagaccgcgcccggaac
caggaccggttcatgcgcgaggagggcgtgatcatggtggccaccatcgccttcggcatg
ggcgtggacaagcccaacgtgcgctttgtctgccacctggagccgcccaagtcccttgag
gcctaccaccaggagaccgggcgcgggggccgcgacggactgcccgcctcggcctggatg
tgtttcggcatgcaggacatcgcggtcatgcgggccatgatcgacgcgggcgaggccaat
gagacgcgaaagcgggtggagcactccaagctcgcctccctgttcgccttcctggaaacc
gcgtcctgccgccgccaggccctgctcggctatttcggcgaacacatcgagccgtgcggc
aactgcgacaactgtttgagcccggtggagacctgggacggtaccgaggccgcgcaaaag
gcgctgtccaacatcttccgcaccgagcagcggttcggcgtcaactacctggcacaggtg
ctggcgggcgcggacaacgaccgcatccggcggttcggccacgaccaggtgtccaccttc
ggcatcggcacggagatgagtcaggatcaatggaagtcggtctaccggcagcttctggcc
gcagggctgtgctccgtggacctcgaccggttcaacgccctgaccctgaacgagcggtcc
tggcccgtgctcaagggcgagcagaccgtccggctgcgcacggacccggtcctgcccaag
gcgtccaaaaagaaaaaacggcgcgtcccggccatggccgaggacgtgctcacgagttgg
gaggccgaagccctgttcgaagccctgcgcgacctgcggctcaatgtggccgaggagcag
ggggtgccgccctatgccatcttcgcggacaagaccctgctggagctggtccgatacagg
ccggccaacctcgaagacttcggctgcattcccggcgtgggcctgaacaagctcaaccac
tacggcgagacctttctggactgcatgaagacccatgaggcggaacacggcaggcccgcc
ggggtcccggaaatacccgaggaactgcgggaaaagctggaaaagaaaaagacgaaaaaa
ttcgagctgtccgccacggaagaaaagaccctggaactcttcaacaggcacggcgacgtg
gaccgggtggccgaggtgcggggattgaagccgccgtccatctggaaacatctggctcag
gccgcgaccctcggcaggttggactaccgcgccgtggtggacctgaccgacggcgaaatc
gacctgatcctgtcctccatcaaatccttcgaagctaagggcatcgtgtccatgaccccg
gtctacgagaccctgaacaagcaatactcctacgagatgctgcggttcctcaaggcgtcg
gcctga
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