Pseudodesulfovibrio portus: JCM14722_20500
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Entry
JCM14722_20500 CDS
T08636
Symbol
radA
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
ppor
Pseudodesulfovibrio portus
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_20500 (radA)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JCM14722_20500 (radA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ATPase
Zn_ribbon_LapB
AAA_25
AAA_16
AAA_22
DnaB_C
AAA
RecA
AAA_24
NACHT
IstB_IS21
ChlI
nSTAND3
DUF7129
SLFN-g3_helicase
ABC_tran
RecX_HTH3
RsgA_GTPase
Zn_ribbon_8
DUF7573
Motif
Other DBs
NCBI-ProteinID:
BDQ34508
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Position
2160481..2161878
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AA seq
465 aa
AA seq
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MCRLLRDSRVGRGEPAGETWTKKGIVKTKETYRCAACGAQSPRWQGQCPSCKEWNTLEAV
TVARRDSKPVGAAAATDAPRPLEDLDSEHLDTRTSGMRELDELLGSGLVPGAAILLGGEP
GIGKSTLLLQLAGSQARLGSRAVYLSGEESLPQLKTRAERLGQLGPGLLAMATNRVEDAL
AVLESHEPPELLIVDSVQTLASNMAEGIPGSVSQVRAVASELVEKTKKTGTTLILVGHVT
KDGQIAGPKLLEHMVDTVLYLEGDRKHFSRILRVLKNRFGPSDELVVFTMKERGLEVVED
PATFFLGARDPSLSGTAMGLAVDGQRPFAVEVQALVTKSFLSIPRRTALGFDTNRLNLLL
AVLEKRLRLNLSGYDIYAKITGGLAYKDPGLDLAVVASVMSSFYDQPLPESAVFWGEIDL
NGQVRPVAAHDVRLKQAARLGHDPVCHSGTAATLADLQRILFGRN
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgtgcaggctgcttcgtgattcccgggtcggccggggcgaaccggcaggcgaaacctgg
accaagaaaggcatcgtgaaaaccaaggaaacatatcgttgcgccgcgtgcggcgcgcag
tcgccgcgctggcaggggcaatgcccgtcgtgcaaggaatggaacacgctggaggccgtg
accgtggccaggcgggactccaagcccgtgggcgcggcagcggccaccgacgcgccccgc
ccccttgaggacctggacagcgagcacctggacacccggacctcgggcatgcgcgagctg
gatgaactgctcggctccggcctggtcccgggcgcggccatcctgctcggcggcgaaccg
ggcatcggcaagtccacgctgctgctgcagctggcgggcagccaggcgcggctcggcagc
agggccgtctacctgtcgggcgaggaatccctgccccagctcaagaccagggcggagcgg
ctgggacagctcggaccgggcttgctggccatggccaccaacagggtggaggacgccctg
gccgtgctggagtcccacgagccgccggagctgctcatcgtggactcggtgcagaccctg
gcctcgaacatggccgagggcataccgggctcggtcagccaggtgcgcgccgtggcctcg
gagctggtggagaagaccaagaagaccggcaccaccctgatcctcgtgggccacgtgacc
aaggacggccagatcgccgggcccaagctcctggagcacatggtggacacggtcctgtac
ctggagggcgaccgcaagcatttttcccgcatcctgcgcgtgctcaagaaccggttcggc
cccagcgacgagctggtggtcttcaccatgaaggagcgcgggctggaagtggtggaggac
ccggccacctttttcctgggcgcgcgggacccgtccctgtcgggcacggccatgggactg
gccgtggacgggcagcgcccctttgccgtggaggtccaggccctggtcaccaagtccttt
ttgtccattccccggcgcacggccctcgggttcgacaccaaccggctcaacctgctcctg
gccgtgctcgaaaagcggctgcggctgaacctgagcgggtacgacatctacgccaagatc
acgggcggcctggcctacaaggaccccggcctggacctggccgtggtggcgtccgtcatg
tcgtccttctatgaccagcccctgccggaatcggcggtgttctggggcgagatcgacctc
aacgggcaggtgcgcccggtggccgcccacgacgtgcgcctcaagcaggcggcccggttg
ggccacgacccggtctgccattccgggaccgcggccaccctggcggacctgcagcgtatt
ctgttcggacgcaattga
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