Pseudodesulfovibrio portus: JCM14722_21730
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Entry
JCM14722_21730 CDS
T08636
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppor
Pseudodesulfovibrio portus
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppor03032
]
JCM14722_21730 (topA)
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_21730 (topA)
Enzymes [BR:
ppor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JCM14722_21730 (topA)
DNA replication proteins [BR:
ppor03032
]
Prokaryotic type
DNA Topoisomerases
JCM14722_21730 (topA)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JCM14722_21730 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BDQ34631
LinkDB
All DBs
Position
2287362..2289779
Genome browser
AA seq
805 aa
AA seq
DB search
MPKDLIIVESPAKVKTISKFLGKDYVVDASVGHVRDLPTRELGVDEEHNFAPHYEVIQGK
QDVVKRLQSAAKKAGTVYLAPDPDREGEAIAWHVAELLKKYNDNIRRIQFNEITARAVKE
ALENAQELNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFRPDEYWPFKVLLAGENPPPFWMDLHKLSGKAVKPGVNHVSTQTEAESLEKALTEG
EFKVDSVQEKQRKRSPLPPYITSTLQQDANRRMGFSAKRTMSIAQRLYEGVELGARGTTA
LITYMRTDSVRIAKDAQDAAKELILDRFGADYYPSKTRNFKTKGGAQDAHEAIRPVDVAI
APEDVKQYLPAEQYKLYRLIWQRFVASQMAVATFWDTTVLVAAPDTIWRAKGERMLFAGF
LAAMDKGSSDDDTELPKLKEGDVLALNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLLDREYAIQEEKRFVPTELGFTVSDQLSEHFKALMDVGFTAGMESDLDDVAE
GKKNWEDLLKSFGDDFYPTLEKARTGMARTQQVTDIMCENCGKPMAVKFGKTGEFLGCTG
FPACRTIKNFSRDEQGEIHVTEREKPEDTGVNCEKCGRPMAIKQSRRGEFLGCTGYPDCK
SIVNFTRDEDGKIKVVESEKPEVVGTCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPREGCEGELVEKSSRRGKLFYSCSTYPKCDYAVWNWPINEACPECKHPVLTRKT
TKDKGEHIACPKKGCGYTRPVDEDA
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagatttaatcatcgtcgagtcccctgccaaagttaagaccatctccaagttc
ctgggaaaggactatgtggtcgacgcttcggtgggccacgtgcgtgacctgcccacccgc
gaactcggggttgacgaagagcacaacttcgccccgcattacgaggtcatccagggcaag
caggacgtcgtgaagaggctccagtccgccgccaagaaggccgggaccgtgtacctggca
cctgacccggaccgcgagggagaggcgattgcctggcatgtggccgagctgctcaagaaa
tacaacgacaacatccggcgcatccagttcaacgagatcacggcccgggccgtgaaggaa
gcgctcgagaacgcgcaggaactcaacgagaacctgttcgactcccagcaggcccgtcgc
atcctcgaccggctggtgggctacaagatttcccccatcctgtggaagaacgtgaagcgc
ggcatctccgccgggcgcgtccagtccgtggcgctgaagatcctggtggaacgggaaaag
gaacgccgcgccttccggcccgacgagtactggccgttcaaggtcctgctcgcgggcgag
aacccgccgccgttctggatggacctgcacaagctctcgggcaaggcggtcaagcccggc
gtcaatcacgtctccacgcagaccgaggccgaatcgctcgaaaaggcactcaccgagggc
gagttcaaggtggactccgtgcaggagaagcagcgcaagcgttcgcccctgccgccgtac
atcacctccaccctgcaacaggacgccaaccggcgcatgggcttttcggccaagcggacc
atgtccatcgcccagcggctctacgagggcgtcgagctcggcgcgcgcggcaccacggcg
ctgatcacctacatgcgtaccgactccgtgcgtatcgccaaggatgcccaggacgcggcc
aaggaactgatcctggatcggttcggcgcggactactacccgtccaagacgcggaatttc
aagaccaagggcggcgcccaggacgcgcacgaggccatccggcccgttgacgtggccatc
gcgcccgaggacgtcaagcagtacctgcccgccgagcagtacaagctgtaccggctcatc
tggcagcggttcgtggcctcgcagatggccgtggccaccttctgggacaccacggtcctg
gtcgccgcgcccgacaccatctggcgcgccaagggcgagcgcatgctcttcgccggtttt
ctggcggccatggacaagggcagcagcgacgacgacaccgaactgcccaagctcaaggaa
ggcgacgtcctggcgctcaacgagctgaaaaaggaacagaagttcacccagccgccgccg
cgatactcggaagcctccctggtcaagaccctggaggaactgggcatcggacggccgtcc
acctatgcggccatcatctccaccctgctggatcgcgagtacgccatccaggaggagaag
cggttcgtgcccacggaactcggcttcaccgtttccgaccagctctccgagcacttcaag
gcgctcatggacgtcggcttcactgcgggcatggagtccgacctggacgacgtggccgag
ggcaagaagaactgggaggacctgctcaagtcctttggcgacgatttttatcccaccctg
gaaaaggcgcgcaccggcatggcccgcacccagcaggtcacggacatcatgtgcgagaac
tgcggcaagcccatggcggtcaagttcggcaagaccggtgaattcctgggctgcacgggt
ttcccggcctgccgcaccatcaagaatttttcccgcgacgagcagggagagatccacgtc
accgagcgcgagaagcccgaggataccggcgtcaactgcgaaaagtgcggtcgccccatg
gccatcaagcagtcccggcgcggcgagttcctgggctgcaccggctacccggactgcaag
tccatcgtcaacttcacccgcgacgaggacggcaagatcaaggtcgtggaatccgagaaa
cccgaggtggtcggcacctgccccgattgcggcggcgagctgctgctcaagaaggcccgc
accggctcccggttcatcgcctgctccaactacccggactgcacctatgccgccccgttc
tccacgggcgttccctgcccgcgcgaaggatgcgaaggcgagctggtggaaaagtcctcg
cgccggggcaagctgttctattcctgctccacctatcccaagtgcgactacgcggtctgg
aactggccaatcaacgaggcctgccccgagtgcaagcatccggtcctgacgcgcaagaca
accaaggacaagggcgagcacatcgcctgtcctaaaaaggggtgcggctatacgcgcccg
gtagacgaggacgcgtag
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