Pseudodesulfovibrio portus: JCM14722_22010
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Entry
JCM14722_22010 CDS
T08636
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppor
Pseudodesulfovibrio portus
Pathway
ppor03030
DNA replication
ppor03430
Mismatch repair
ppor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM14722_22010 (dnaE)
03430 Mismatch repair
JCM14722_22010 (dnaE)
03440 Homologous recombination
JCM14722_22010 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppor03032
]
JCM14722_22010 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppor03400
]
JCM14722_22010 (dnaE)
Enzymes [BR:
ppor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JCM14722_22010 (dnaE)
DNA replication proteins [BR:
ppor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JCM14722_22010 (dnaE)
DNA repair and recombination proteins [BR:
ppor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JCM14722_22010 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
DUF655
HHH_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
BDQ34659
UniProt:
A0ABM8ATM0
LinkDB
All DBs
Position
complement(2321237..2324782)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIKDLLSRAKDLGMPAVAITDHGSMYGAVTFYMAALEMGI
KPIIGCEVYVAPGDVDEENAHHKKDHGGGYHLVLLAKNQRGYKNLIKLVSSGYLDGFYYK
PRVCKNLLKKYSEGLIALSACLAGEVPRKLMNEGLEAGCEMARTYESIFPGRFYLELQDN
GIGKQTRLNELLIKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRM
ETQELYFKTPEEMEQAFAHVPEAIANTQKIAEQCNLEIELGNYYFPEYELSEGVSDLNEE
FERLCRAGLKRRLEKITYTVDEKVYWDRLDYELGVIREMGFPAYFLIVQDFINWAKDNRI
PVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVK
YCADKYGSDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPEDPGVMAKLLGV
EKAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISDKPMTE
YLPLYKGKKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKEAPDLDTL
HLDDPDTFAIFAKGDTDGIFQVESSGMRKYLRMLRPDCFEDIVAMLALYRPGPLGMIGSH
GVSMVDEFIMRKHGDIEVTYPHPSLEETLKPTYGVMVYQEQVMATAMVIGNYSLGEGDLL
RRAMGKKIAEEMAKQRSRFLEGSRENDIPDKVANEIFDTMEKFAAYGFNKSHSAAYALIS
YHTAYLKAHFPVEFMAALMSSEMNNTEKIIMYINACRDMEITVKQPDINAGMARFSVKDG
DILFAMAAIKNVGEEAINEIVAERKENGPFTNIFDFCERVNLRRVTKRVLESLIKAGALD
CFNCSRAALLQDLEKAVALGQKKAKEKDSGMLNMLDMLGGGGQPDASTQPTCSLCEEFED
REKLALEKEVLGFFLSGHPLLAYRQDMQRLRTSTLDDCKSMPNGTEVRVAVIIPDYKQFI
TRKGDPMAFCTAEDLTTSGEVTMLPNVYAEARELLDADRPLMIQGKIDQRDDQPGPEDAP
KSAKILADKVLFLADAVQGSDQPVSLWIGEKRAEDNHLNALKAILQRYPGNTTVNLGIIT
RESVINLKLGNGWKVYPGRDFWKDVEAWQNGDAVRFRAEQE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaattcgttcatcttcacgtccataccgaatacagcctgctggacggggcgatc
cgcatcaaggacctgctctcccgggccaaggacctgggcatgcccgccgtggccatcacg
gaccacgggtccatgtacggtgccgtgaccttctacatggcggccctggaaatgggcatc
aagcccatcatcggctgcgaggtctatgtggcccccggcgacgtggacgaagagaacgcc
caccacaagaaggaccacggcggcggctaccacctggtgctgctggccaagaaccagcgc
ggctacaagaacctgatcaagctcgtttcctccggctacctggacggcttctactacaag
ccgcgcgtctgcaagaacctgctcaagaaatactccgaggggctcatcgccctgtccgcc
tgcctggccggcgaggtgccgcgcaagctcatgaacgagggactggaagcaggctgcgaa
atggcccggacctacgaatccatctttccgggccggttctacctggagcttcaggacaac
ggcatcggcaagcagacgcggctcaacgaactgctcatcaagtgcgccgaaaagaccggg
ctgcccctggtggccaccaacgactgccactacctgaccgccgaggactacgaggcccac
gacaccctgctctgcatccagacccagaccacggttgacgcggaaaagcggttccgcatg
gagacgcaggagctgtacttcaagacgcccgaggagatggaacaggccttcgcccacgtg
cccgaggccatcgccaacacccagaagatcgccgagcagtgcaacctcgagatcgagctg
ggcaactactatttccctgaatacgaactgtccgagggcgtgtccgacctgaacgaggag
ttcgaacgcctctgccgcgccgggctgaagcggcgtttggagaagatcacctacacggtg
gacgagaaggtctattgggaccggctcgactacgagctgggcgtgatcagggaaatgggc
ttccctgcctacttcctcatcgtccaggacttcatcaactgggccaaggacaaccgcatc
ccggtgggcccgggccgtggctcggcagccggttccatcgtggcctggtcgctcaagatc
accaacctcgacccgctcccctacgacctgctgttcgagcgcttcctcaacgtggagcgc
gtgtccatgcctgatatcgacgtggacttctgcgaacgccgccggttggaggtggtcaag
tactgcgccgacaagtacggcagcgaccgcgtggcccagatcaccaccttcggcaccatg
aagaccaaggcggtcatcaaggacgtgggccgggccctgggcatgaccttcggcgagacc
gaccgcatcgccaagctcatcccggaagaccccggcgtcatggccaagctgctgggcgtg
gaaaaggccaagatcaccgtgcccaacgcggtcaaggccgtgaccgagctggacgacatg
gtggccaccgaccccaaggtggccaagctcatcgacatttccacccggttggagggattg
tgccgacacgcctccacccacgcggcgggcgtggtcatctccgacaagcccatgaccgag
taccttcctctctacaaggggaagaagggtgaaatcgtgacccagttcgacatgaagaag
gtcgagaaggtcggcctgatcaagttcgacttcctgggtcttcgcaccatgacggtcatc
gaggactgtttggacatcatccgcgaacagggcaaggaagcgcccgacctggacaccctg
cacctcgacgacccggacaccttcgccatcttcgccaagggcgacaccgacggcatcttc
caggtggagtcctcgggcatgcgcaaatacctgcgcatgctccgcccggactgcttcgag
gacatcgtggccatgctcgccctgtaccggcccggcccgctgggcatgatcggttcccac
ggcgtgtccatggtggacgagttcatcatgcgcaagcacggggacatcgaggtcacctac
ccgcacccgtccctggaggagaccctcaagcccacctacggcgtcatggtctaccaggaa
caggtcatggccacggccatggtcatcggcaactactcgctgggcgagggcgatctgctg
cgccgcgccatgggaaagaagatcgccgaggagatggccaagcaacggtcccgcttcctg
gaggggtcgcgggaaaacgatatcccggacaaggtcgccaacgaaatcttcgacaccatg
gaaaagttcgcggcatacggcttcaacaagtcccactccgccgcatacgcgctcatctcc
taccacaccgcctacctcaaggcccacttcccggtggagttcatggccgcgctcatgagc
tcggaaatgaacaacaccgaaaagatcatcatgtacatcaacgcctgccgggacatggag
atcacggtcaagcagccggacatcaacgcgggcatggcgcgcttctcggtgaaggacggg
gacatcctgttcgccatggccgccatcaagaacgtgggcgaagaggccatcaacgagatc
gtggcggagcgcaaggaaaacggcccgttcaccaacattttcgacttctgcgagcgcgtc
aatctccggcgcgtgaccaagcgcgtgctcgaatccctgatcaaggcgggcgcgctggac
tgcttcaactgctcccgcgcggccctgctccaagacctggaaaaggccgtggccctgggc
cagaaaaaggccaaggaaaaggattccggcatgctcaacatgctggacatgctcggcggc
ggcggacagcccgacgcgtccacccagcccacctgctccctgtgcgaggagttcgaggac
cgcgagaagctggccctggagaaagaggtcctcggcttcttcctgtccggccacccgctc
ctcgcctaccgccaggacatgcagcggctcaggacctccaccctggacgactgcaagtcc
atgcccaacggcaccgaggtgcgcgtggccgtgatcatcccggactacaagcagttcatc
acccgcaagggcgaccccatggccttctgcaccgccgaagacctgacaacgtccggcgag
gtcaccatgctgcccaacgtctacgccgaggcgcgcgagctgctcgacgcggaccgcccg
ctcatgatccaggggaagatcgaccagcgcgacgaccagcccggccccgaggacgcgccc
aagtccgccaagatcctggccgacaaggtcctgttcctggccgacgcggtccagggatcg
gaccagcccgtgtccctgtggatcggcgagaaacgggccgaggacaaccacctcaacgcc
ctcaaggcgatcctgcagcgctatcccggcaacaccaccgtcaacctgggcatcatcacc
cgcgaatcggtcatcaacctcaagctcggaaacggctggaaggtctacccgggccgcgac
ttctggaaggacgtggaggcctggcagaacggcgacgccgtgcgcttccgggccgagcag
gagtga
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