Paenibacillus polymyxa Sb3-1: RE92_03830
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Entry
RE92_03830 CDS
T03812
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03030
DNA replication
ppoy03410
Base excision repair
ppoy03420
Nucleotide excision repair
ppoy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RE92_03830
03410 Base excision repair
RE92_03830
03420 Nucleotide excision repair
RE92_03830
03440 Homologous recombination
RE92_03830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppoy03032
]
RE92_03830
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_03830
Enzymes [BR:
ppoy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RE92_03830
DNA replication proteins [BR:
ppoy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RE92_03830
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RE92_03830
NER (nucleotide excision repair)
GGR (global genome repair) factors
RE92_03830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
DNA_pol_A_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AJE50243
LinkDB
All DBs
Position
complement(892443..895097)
Genome browser
AA seq
884 aa
AA seq
DB search
MDKLMLIDGNSIIYRAFFAMPPLTNSSGQQTNAVYGFTTMLLRLLEEHKPTHILVAFDAG
KITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTLSRTA
DEAGFNVLVVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQIIDLKG
LMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTDELKGKMKERVETHADDARMSKE
LATIYRDVTLDKQLEDVVFSGLQAETAGPALAKLEFKSLLERLSLSGEVGSAGVGVEEAA
ADVTVLDEERISELVEVLNNIDVLHVETHGDNPHHAEIVGLIFAATGRQFFMTLNVLQSD
AATPIREWLADPERKKRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSG
LAAKYGLSSIRPDDEVFGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQAELEKTEMHK
LFHELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIAGVEFNLNSPK
QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL
KEISEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAA
DYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGI
VYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRY
LPEINASNFNQRSFAERTAMNTPIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDEL
VFEVPPEEMEAMKELVPATMEAALKLAVPLKAEVSYGSNWYEAK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggataaactcatgcttatagatggtaacagtatcatataccgggcgttttttgctatg
ccgccgttgacgaattcaagcggacagcagacgaacgcggtgtatggatttacgacaatg
ttattgcggcttttggaggagcacaaaccaacacatatcttggttgcctttgatgctggt
aaaattacgtttcgccataaagggtacgaggattacaaaggtggacgggagaaaacgccg
ccggagctgtcccagcaatttccgctgctgaaagagctattgaccgcctttggcattgcc
caatttgaactggatggctatgaggcagacgatattataggcaccctgtccagaacagcg
gacgaagcgggtttcaatgtgctggttgtgactggcgacaaggacatgcttcaattggct
tcagaccatgttacggtcggcttaacccgcaaaggggttaccgaggtggaaacgtacgga
cctgagcagattcaggaacgttacggcttgaagccgctgcaaatcatagaccttaagggt
ctgatgggcgatacgtcggataatattcctggcattccgggcgtgggtgagaaaacagcg
ctcaagctgctgcatcaatatggttcagtcgaagaggtgctggcgcacacggatgagctg
aagggcaaaatgaaagaacgcgtggagacacatgctgacgatgcacgaatgagcaaggaa
ttggcgactatttatcgggatgtaacgttggacaaacagctggaagatgtagttttcagc
gggctgcaggctgagacggctggaccagctctggcgaagctggagttcaagtccctgctg
gagcgtttatccttatcgggcgaggttggcagtgctggagttggcgtagaggaagccgcg
gcagacgtgactgtgctggatgaagagcgtatcagcgaattggtagaagtgctgaataac
atagatgtgctgcatgtggagacgcatggtgataatccgcatcatgctgaaattgtaggc
ttaatatttgccgcaacggggcggcagttctttatgacactgaatgttctacaaagtgat
gcagctacccctattcgcgaatggcttgccgatcctgaacgcaaaaaacgcggtcatgat
ttgcaccgtacagacttggctttacactggcatggaattgagtttgccggagccgaattt
gatgtgcaactggccggatacttgctagacccgacagacgcgaatcagacgttgagtgga
ctggcagccaagtatggcttgtcatcgattcgtccagatgacgaagtgtttggtaaagga
gctaaatataaagttcctgacgtggatgtactatccgatcatgtggcacgtaaggcagcg
gtgatcgaagcattggtacctgtgcagcaggcggaactggaaaagacggaaatgcacaag
ctgttccatgagctggagatgccgttatcacgcattctggcggatatggagaagcagggg
attttggtgaatgtagaggaactgcgcgctttgggtaaagaatttgaagcccagattgca
acgttggtgggtgagatctacagcattgcaggggtagagttcaatcttaattcgcccaag
cagttgggtgagattttgtttgataaactgggtctgccagttattaaaaagacaaaaacc
gggtactcgaccgatgcagaggtactggaaaagcttgctccatatcatgatattgtgcaa
aatattttgcaatatcgcaccattgccaaactccaatcgacgtatgtcgaaggattgctt
aaagaaatttcggagaagacaggtaaagtgcatacgtatttccggcagacggttgcggca
accggacgcttgagcagtcaatttccgaatttgcagaatatcccgatccgtctcgaagaa
ggacgcaaaatccgcaaagtatttgttccctcggagccgggctggtcgattttggcggca
gactattcacaaatcgagctgcgggtgctggctgatatttcggatgatgagcgtttgaaa
gaggcttttgtccacgatatggacatccataccaagaccgcatccgatgtgttcggtgta
ccagcagaagctgtagattccgatatgcgtcgttccgcaaaggcggtcaactttgggatc
gtttacgggattagcgactatggtctgtcgcaaaatttgaatattacccggaaggaagcg
gctcgctttatcgaccagtattttgacgtgttccaaggtgttcgccgttacatggatgat
attgtgaaggatgcgaagagggatggatacgtaaaaacgctactggaacgcagacgatat
ttgcctgagattaacgccagcaatttcaaccagcgttcgttcgctgagcgtacagcgatg
aatacgccgattcaaggtaccgcagccgatattatcaagctggcgatggtgcagatggac
gcagcgctgcgtgaacgcaatcttcgcagccgcatgctgctacaagtacatgatgagctt
gtattcgaggttccgcctgaggaaatggaggcgatgaaagagcttgtcccggctaccatg
gaagctgcattaaaattggctgtaccgcttaaagcggaagtcagctatggcagcaattgg
tatgaggccaagtaa
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