Paenibacillus polymyxa Sb3-1: RE92_05125
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Entry
RE92_05125 CDS
T03812
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE92_05125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoy03019
]
RE92_05125
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_05125
Enzymes [BR:
ppoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE92_05125
Messenger RNA biogenesis [BR:
ppoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE92_05125
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RE92_05125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AJE50483
LinkDB
All DBs
Position
complement(1159631..1161529)
Genome browser
AA seq
632 aa
AA seq
DB search
MSVQAPTLERAQDLLQKFYGYPDFREGQKKIVASMLEGNDTLGIMPTGGGKSICYQIPAL
LHEGLTIVVSPLISLMKDQVDALTTMGIAAAYINSTLSGREVNDRIRAARNGDLKLLYVA
PERLELDWFRDEMAQLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDGLYERPIVAAFT
ATATPQVMDDIVRLLRLRSPETFVTGLGRPNLAFSVLRGEDKRSFLLNYAREHEGESGII
YAATRKDVDDLYQRLRDAGMAAGRYHAGMTDQERADSQEGFLYDDIRVIVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGDPSQCILLFGPQDIVTQKFLIEQNPQDEDR
KRNDYRKLQQMVDYCYTTRCLRSAQLEYFGEAQEHEACGICSSCTDERELVDMTIDAQKI
FSCIHRMRERYGVSMVASVLKGSRNKKVLQYGFDSLPTYGVMGNRTEKEIAEIINVLVSE
GYLMLSEGQYPVVRLQQLAAEVLRGQREVMQRVVRHATAFAGGAGSRGRKGRDTYPAAVN
ETVFEQLRLIRRDLAAQEHVPSYIIFNDATLREMSVASPQSEADMLRIKGVGEVKFRKYG
KPFLDFFQNQGNTGGMVSEDEIFADDVYEDFE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacaagcaccaacattggaacgggcgcaggacttgctgcaaaaattttatggc
tatcccgatttccgggagggacaaaagaaaattgtggccagtatgctggaaggcaacgac
actttgggcatcatgccaacaggtggcggaaaatcgatatgctaccagattcccgcgttg
ttgcatgaggggctgaccattgttgtgtcaccactgatctcgttaatgaaagaccaggtg
gatgcgctgaccacgatggggattgcagctgcctacattaatagcacgttgagcggtcga
gaagtcaacgaccgtatacgcgccgcacggaacggagatttgaagttgctgtatgtcgcc
cctgaacggctggaattggattggttccgtgatgagatggctcagttaccgatttcctgc
gttgcggtagatgaggctcactgtgtatcccagtggggtcatgattttcgtaccagctat
ctggcggtggctccattcgtggacgggctgtatgaacgtccaatcgtagctgcgtttacg
gcaacggctacaccgcaggttatggatgatatcgtacgcctgcttcgtctgcgttcaccg
gaaacgttcgttacaggtcttggaaggccgaatttggcattcagtgtgctgcgtggggag
gacaaacgtagctttttgctaaattatgcccgtgaacatgagggtgaatcgggcattatt
tatgcggcgacacgtaaggacgtggatgatttatatcaacgcctgcgcgacgctggcatg
gcagcaggacgttatcatgcaggaatgactgatcaggaacgtgcagacagccaggaaggg
tttctttacgacgatatccgtgttattgtcgcaaccaatgccttcggtatggggatagat
aaatcaaacgtacgttatgtcattcattacaatatgcctaaaaatatggaggcgtatgta
caagaagcaggacgcgcaggacgtgatggtgacccaagtcaatgtattttgctgttcgga
ccgcaagatattgtgacccagaagttcctgattgagcaaaatccacaggatgaagaccgc
aagcgcaacgactaccgtaagctccaacagatggttgactattgctacacgactcgctgc
ctacgttcagcacagctggagtatttcggagaagcgcaggagcatgaagcctgcggcata
tgcagttcatgtacagatgagcgggaactggtggatatgaccatagatgcgcaaaagatt
ttttcgtgcatacatcgtatgcgggaacggtatggggtttcaatggtagcctcggtgttg
aaaggctcgcgcaacaaaaaggtgctgcagtatggttttgacagcctgccaacctatggt
gtgatgggcaaccgaacggaaaaagaaattgctgaaattatcaatgttcttgtttcggaa
ggctatctgatgctatccgaggggcaatatccggtcgtacgcttgcagcagcttgctgct
gaagtgctgagaggccagcgcgaagttatgcagcgtgtggtccggcatgccactgctttt
gcaggtggagcgggatcacgtggacgaaaggggcgcgatacctatcctgccgcagtcaac
gaaactgtgttcgagcaattgcgcctgatccgccgtgatctggccgctcaggagcatgta
ccgtcttatatcatcttcaatgatgccacgctgcgagagatgagcgtagcgagtccgcaa
tccgaggcagacatgttgcggatcaagggtgttggtgaagtgaagttccgcaagtatggc
aagccgtttcttgatttctttcaaaatcaggggaataccggcggaatggtgagcgaggat
gagatctttgcagatgatgtgtacgaggattttgaatag
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