Paenibacillus polymyxa Sb3-1: RE92_05855
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Entry
RE92_05855 CDS
T03812
Name
(GenBank) DNA repair protein
KO
K10979
DNA end-binding protein Ku
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RE92_05855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_05855
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RE92_05855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
SCRE
DUF7445
YacG
CDC24_OB3
ZnF_RZ-type
Motif
Other DBs
NCBI-ProteinID:
AJE50616
LinkDB
All DBs
Position
1311330..1312244
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AA seq
304 aa
AA seq
DB search
MHTVWKGAISFGLVHVPVKMFSATEDKDISMRYIHKECGSPLSYVRKCPVCDKEVEWEEI
GKGYEYEKGKFVMFDKEELEQVSGQADKNIVILDFVDLQEIDPIYFQKTYYLSPDQAGSN
AYKLLMNAMKDTGKIGIAQISIRSKSSLAAIRVLDECLAVETMFYPDEIRPIAQVPNLPG
QEEVKEKELTMAKMLIEQLSTPFDAAKYTDQYRERLLDLIQHKVAGEEVRIAPTQPQTNV
VDLMAALQASIEAVKPVVTDPGPAAKKRPTRKPAAVTAQQAVAGDALSPTPVKKRRSTTK
RKET
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgcatacggtctggaaaggcgcgatcagcttcgggctggttcatgtgccagttaaaatg
ttctcagcaactgaggacaaggacatttccatgcgttatattcacaaggagtgtgggagt
ccactaagctatgtacggaagtgccctgtttgtgataaggaggttgaatgggaggaaatt
ggaaaagggtacgaatatgaaaaaggaaaatttgtcatgttcgacaaggaagaactggag
caagttagcggacaagccgataaaaatatcgtaattttggactttgtggatttacaggaa
attgatccgatctactttcaaaaaacgtattatttgtccccggatcaggctggctcgaat
gcgtataagctactcatgaatgcaatgaaagataccgggaaaatcgggattgcccaaatc
tccatccgctcaaaaagtagtctggcagccattcgcgtgctggatgaatgcttggcggtg
gagaccatgttttatccggacgaaatccgtcccattgctcaagttcccaacttacctgga
caggaggaggttaaagagaaagagctgaccatggcaaaaatgctgattgagcagctatct
accccttttgatgcagcaaagtatacggatcagtatcgcgaacgtctgctggatcttatc
cagcataaagtggctggtgaagaggtgcgaattgccccaacacagcctcagaccaatgtg
gttgacttaatggctgcccttcaagccagtattgaggcagtgaagcctgtcgttaccgat
cctggtcctgctgcgaaaaaacgtcctacgcgtaaaccagcagccgtgacagcacagcag
gctgtggcaggcgacgccctctctccgactccagtcaaaaagagaagaagcaccaccaaa
cgtaaagaaacttga
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