Paenibacillus polymyxa Sb3-1: RE92_07105
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Entry
RE92_07105 CDS
T03812
Name
(GenBank) rhamnogalacturonate lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
RE92_07105
Enzymes [BR:
ppoy01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
RE92_07105
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Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP_3
FG-GAP
Beta-prop_CGLA
Motif
Other DBs
NCBI-ProteinID:
AJE50853
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Position
complement(1631555..1633420)
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AA seq
621 aa
AA seq
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MDKRFRHAVLLCLGVMLCGVVTPMDSPISAASTRQMEKLSRGTVAVKVPEGVLVSWRLLG
TEADSVGFNLYRGASKVNDAPITSRTNFLDKAGTTSSSYTVRAVVNGAEQAASPAVKAWN
SNYLDVPIQQPAGGTTPDHVNYTYNANDASVGDLDGDGEYEIVLKWDPSNSKDNSQSGYT
GNVFLDGYELDGTRKWRIDLGRNIRAGAHYTQFLVYDFDGDGKAEVVCKTADGTVDGIGV
KIGDASADHRNTSGYILKGPEFLTVFSGDTGKALSTIDYVPPRGTVSSWGDNYGNRVDRF
LAGVAYLDGVRPSIVMARGYYTRTVLVAYDWRNGNLSRRWTFDSNSSTNAGTAGQGNHSL
SVADVDGDDKDEIVYGSLVVDDNGAKLANTGMGHGDALHVGDLDPDRSGYEVFKVNEDKN
ATYGAAMYDPRNGNILWGVKTGKDTGRGMSADIDPRTKGNEQWAPVIGLRSAQGQLITNT
TPSSINFGIWWDGDLLRELLDHTSSSAGKIDKWNYANSTTSNLLTATGTSSNNGTKGTPS
LQADLFGDWREEVIWRKSDNSALRIYTTPYESEHRFYTLMHDPVYRLSVAWQNVAYNQPP
HTGFYLGEGMSKPPQPNIYTP
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaggtttcggcatgctgtattgctctgtctcggtgtcatgttgtgtggagtg
gtcactccgatggatagcccaatctcagctgcctctacaaggcaaatggagaagctgagc
aggggaactgtcgcagtgaaggtaccagagggtgtactggtgagctggcgcttattgggt
acggaagcggattcggttggtttcaatctgtacagaggggcaagcaaggtgaatgatgcg
ccgattacatcgagaaccaacttcctggacaaggcaggtacgacctcatcttcgtatacc
gttcgtgccgtggttaacggagcagagcaggccgcttctccagcggtaaaggcatggaac
agcaactatctggacgttcccatacagcagcctgcgggaggtacaaccccggatcatgtg
aactacacgtataatgccaatgatgccagtgtgggggatcttgatggggatggcgagtat
gagattgtgctgaaatgggacccttccaattctaaggataattcgcaatccgggtatacg
ggaaatgtatttttggacggatatgagctcgatggaacacgcaaatggcgaatcgatctg
ggacggaacattcgggctggtgcacactatacgcaatttctcgtctatgattttgatgga
gatggtaaagcagaggttgtatgcaagacagcagacggcacggtagatggtataggtgta
aagattggcgacgcttcggctgatcatcgcaacacgagtggatatattttgaaaggcccc
gagtttctaactgtgttctcaggtgatacaggcaaggctcttagtacgattgactatgtg
ccaccgcgcggaacggtgtccagctggggagataactatggtaaccgtgtggatcgtttt
ctcgccggggttgcttatctggatggcgtgagacccagcatagtgatggcacgtggttac
tacacgcgcactgttctagtcgcatatgattggcggaacggcaatctaagccgccgctgg
acctttgacagcaacagctccaccaatgccgggacggctggacaggggaatcacagtttg
agtgtggcagatgtggatggagatgataaggatgagatcgtgtatggctcactggttgta
gacgataacggagcgaagctggctaacacgggaatgggacatggagatgcgcttcatgtc
ggggatttggacccagaccgttcaggatatgaagtatttaaggtaaacgaggataaaaat
gccacctacggagcagccatgtacgatccgcgcaatggcaacattttatggggcgtaaaa
acaggcaaggataccggacgaggcatgtcggcagacattgatccgcgtacgaaggggaat
gagcaatgggcaccagtcatcggattacgttcagcccaggggcagctcattaccaacacg
acgccgtcttctattaattttggtatctggtgggatggggatctgctgcgtgaactgctg
gatcatacctcctcaagcgctggtaaaattgacaagtggaactatgcgaactcgacgact
tccaacttgcttacggccacagggacgagttccaataacggaaccaaaggaacaccgtcg
ttgcaggctgatctgttcggtgactggcgggaggaagtcatttggcgcaaaagtgataat
tcggcgctgcgtatctacacaacaccttacgagtcagaacaccgattctacacgcttatg
catgatccggtgtatcgcctgagtgtggcctggcagaacgtagcctataatcagcccccg
cacaccggattttatctgggagaagggatgtccaagcccccgcagccgaacatatacact
ccttga
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