Paenibacillus polymyxa Sb3-1: RE92_08840
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Entry
RE92_08840 CDS
T03812
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03420
Nucleotide excision repair
ppoy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RE92_08840
03430 Mismatch repair
RE92_08840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_08840
Enzymes [BR:
ppoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE92_08840
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RE92_08840
MMR (mismatch excision repair)
Other MMR factors
RE92_08840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
YdjO
AAA_30
DUF2461
Motif
Other DBs
NCBI-ProteinID:
AJE51164
LinkDB
All DBs
Position
2017853..2020288
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AA seq
811 aa
AA seq
DB search
MNPNPAFYPRPIGVPYSTTSPQARRASMDTSITLVPDTNQDAAYFRAIENAGIHLNRPQI
QAVRHGKGPLLTLAGAGCGKTTVLAARAGYLMAMRDVPASSILLVTFTSKAAAEMKLRIA
GLPGVRPAAARAVQARTFHSFALAMLRHRGVQDEVFGETQAQHTVMKMMLRQLGLSEAFQ
PESLLSALSAWKAEGRSADELPETIREEADAKRAMLAYEAWKQERSKMDFDDILLRASVL
LRDPDVLQPLQRRFSYIMVDEFQDTNALQYEMVQRLAARHRNLMVVGDDDQTIYTFNGAR
QESILEFDKVYKDAKVITLDINYRSDARILGLGSNIVAKNVHRRSKRLAAAGREGLPPQF
ATPSGPEEEAGHIVTHLLGQVEEGRLRYRDIAILHRTASGSRSIFEQLIMRDVPFIQYGA
GAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTLGPLYVSREAGMEWIMREEKQQAKKYPL
IHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGDTGAWTHYK
ETMQESLEELETAAKRFDTVEAFVHFADELSERHRQMESLRREEDSDAVRLMTIHRAKGL
EFPCVYWIGASEGILPHSSALHSELPEDRRAGAAPATAVDNDAALEEERRLAYVAVTRAK
ELLYITSPASNHGKPAAVSRFLLEAYGVTPPEASKPDTRRSSFGQPKGTSGYGSRASGGS
PASGTATRVSSRPGSTPAATTARTASAAARSQTEPRVDVPVWKCTDAACKAWMRRDTVGG
RRTTTASAGTPPVCPLCSSPMTEGTRNIPAR
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaaatcctgcattttacccccgacctatcggggttccttattcaacgacgagc
cctcaggcacgtcgagcctctatggataccagtataacgctggtacccgacaccaaccaa
gacgcggcttattttcgtgctatagagaacgcgggcattcatctgaaccgcccgcagatt
caggctgtacgccatggtaaaggcccccttctaaccctggcaggggctggctgcggtaaa
accacggtgctggctgcccgtgcaggctacctcatggcgatgcgggatgtccctgcatcg
tccatcctgctggtgaccttcaccagcaaagcagctgccgaaatgaagctgcgcatcgcg
ggactacccggtgtgcgacctgccgctgcacgtgcagtacaggcccgtaccttccactcg
ttcgctctggcgatgttgcgtcatcgaggcgtgcaagacgaagtgttcggtgaaacgcag
gctcagcataccgtcatgaaaatgatgctgcgccagcttgggctaagcgaggctttccag
ccggaaagcctgctgtccgccctctccgcctggaaagcggaaggccgtagcgcagatgag
ctgccggaaaccatacgcgaggaagcggatgccaagcgtgccatgctcgcctatgaagcg
tggaaacaggaacggagcaaaatggattttgacgatattctgctgcgtgcctccgttctc
ctgcgtgatccggatgtgcttcagccgcttcaacgacgtttttcctatatcatggtcgat
gaatttcaggatacgaatgccctgcaatacgaaatggtgcaacgattggctgcgaggcat
cgcaatctgatggtcgtcggagatgatgaccagacgatctatacctttaatggagcccgc
caggaatccattctggagtttgataaggtctataaagatgcaaaggtcattactcttgat
attaattatcgcagtgatgcacgcattttggggctgggctccaacatcgtcgccaaaaat
gttcatcgacgctccaaacgtcttgcggctgccgggcgtgagggcttgccgccacagttt
gccaccccatctgggcctgaggaagaggcgggacatattgttactcatctgctcgggcag
gtagaagaaggtcgtcttcgctatcgggatatcgctattttacatcggacagccagcgga
agccgatctatttttgagcaattaattatgcgggatgtcccatttattcagtacggagca
ggagccgtattttacgatcagtctctgattcgtcccttaatggatcacttgcgcttgtcg
ctgaatccccgccgaatggaatccattccaagtacccttggaccgctgtatgtctcccgt
gaggctgggatggaatggattatgcgcgaagagaaacagcaggctaaaaaatacccgcta
atccacctcagccgctgggatcgactacgtgattttcagcgtgaacaggtgaaagaacgc
attcggttgattcgcagtctcactaccatgaagcctgcctatgccattcaagaaatgcgg
cgcgtcttttatgacaagtatttggaaagcggagatacgggcgcgtggacacattataag
gaaacgatgcaagaaagtctggaggagcttgaaacggcagccaagcgctttgacacggta
gaggcattcgtccactttgcggacgagctttcagagcgccaccgccagatggaatctctg
cgcagagaggaagacagcgatgctgttcggctcatgacgatccaccgtgccaagggactg
gagttcccttgcgtatattggatcggagcaagtgaaggcatccttccgcatagctcggct
ctacacagcgagctgccagaggatcgtcgggcaggcgccgcccccgcaacggctgtggat
aacgatgctgcgctggaggaagagcgccgcctcgcttacgtggccgtcacccgggcgaag
gagctgttgtacatcacctcccccgcctccaatcacggcaagcctgccgccgtgtctcgc
ttcttgctggaagcctatggggtcactccccctgaggcttccaagccggacacgcgtcgc
agcagctttggccaaccgaagggtacttcgggttatggcagccgtgccagtggtggttcg
ccagcgtctggcacggcaacccgcgtgagcagcagaccggggtcaaccccagccgccact
acagcacggacggcctcggcggcggctaggtcacagacagagccacgcgtcgatgtgcct
gtgtggaaatgcacggacgccgcctgcaaggcgtggatgcggcgcgacacagtaggtgga
cgccgcacaactacggctagtgcaggcacgccaccggtgtgtccgctttgctcctccccg
atgacggagggaacgcgcaacatcccggccagataa
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