Paenibacillus polymyxa Sb3-1: RE92_09505
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Entry
RE92_09505 CDS
T03812
Name
(GenBank) DNA-directed RNA polymerase subunit sigma
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy02020
Two-component system
ppoy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RE92_09505
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RE92_09505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoy03021
]
RE92_09505
Transcription machinery [BR:
ppoy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RE92_09505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
HTH_Tnp_ISL3
HTH_3
HTH_26
Sigma70_r4_2
HTH_Crp_2
Xre-like-HTH
DNA_pol3_delta_C
MarR
MarR_2
Phage_CII
HTH_28
Sigma70_r4
HTH_17
DUF7343
HTH_24
HTH_IclR
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AJE51273
LinkDB
All DBs
Position
2157938..2159254
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AA seq
438 aa
AA seq
DB search
MRYGLQQEQTFRLAMTPELRQAITILQYSSVDLMSYLHEQANENPIIDLTEIDMSIERIN
TEEEYSPRKNDNPVDLLDFVSNPADNLYRHLKAQLGMVSGLSRLQQMIGMFLIGNLNEKG
YLELDVNTVAGILDVPTDEVENILALIQGFEPAGIAARSLEECLLLQLRYAGNDDVYLEE
IVRHHMVNLSCNRIQKIADALGIDIHMVQQITDQIRKLNPCPGAAFAPYERQHHIADISV
EKFKNDYIVTVNDITVPRVGINPFYQSMLRKPAMEEEKRFLREKMNTALWLIHSLEQRRL
TLMRVAQAIVDRQREFFEHGVYHLKSMTQKEIAEITGLHESTISRAVSNKYMQTPRGLFE
LKYFFTSALGSKDGDATSSESAKMRIKQIIDGEEKQKPFSDQAITELMAKEGLELSRRTV
AKYREELGYLSSARRKVY
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgcgctacggattacagcaagagcaaacattcaggctggctatgactccagaattacga
caagccatcacgattcttcaatattcttcggtcgatctgatgtcatatcttcatgagcaa
gcaaatgaaaatccgatcattgatttgacagagatcgacatgtccatcgaaagaatcaat
acagaagaagaatattcgccacgaaaaaatgataatccggtagaccttctggattttgtc
tctaatcccgcagataatttatatagacatcttaaagcgcagcttgggatggtcagcggg
ctatccaggctacaacagatgattggcatgtttctgattgggaatttaaatgaaaaaggc
taccttgagctggatgtaaatacagttgccggaatacttgacgtccccaccgatgaggtt
gaaaatatacttgccctgattcaaggctttgaaccggcaggaatcgctgcccgcagtctg
gaggaatgccttcttttgcagctgcgatatgccgggaatgatgatgtttatctggaagaa
atcgtgcgacatcacatggtcaatctttcatgtaaccgcatacaaaaaatcgcggatgct
ctggggatcgacattcacatggtacaacaaattaccgatcagatacgcaagctgaatcct
tgtccgggagcggcatttgctccatatgaacgccagcatcatatagcagatatctcagtg
gagaaatttaaaaacgactacattgtgacagttaatgatatcacagtcccacgcgtcggg
attaatcctttttaccaaagtatgcttcgaaagccggctatggaggaagagaaacgattt
cttcgtgagaaaatgaatacggcattatggcttattcatagccttgagcagcgccgcctg
accctgatgcgtgtggcccaggctattgttgataggcagcgggaattttttgagcatggc
gtttatcatctcaaatcgatgacccaaaaggagattgctgaaataaccggcctgcatgaa
tccacgatcagccgggcggtcagtaataaatacatgcagacgccccgtggattgtttgaa
ctcaaatatttcttcacctccgccctaggatcgaaagacggagatgctacttcatcagag
agcgcaaaaatgcggataaagcagatcatcgacggtgaagagaagcaaaaaccattttca
gatcaggcaatcacagaactgatggcaaaggaaggactagagctgtcacgcagaacggta
gccaaataccgagaagaattggggtatttatcctccgccaggagaaaagtgtattaa
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