Paenibacillus polymyxa Sb3-1: RE92_12145
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Entry
RE92_12145 CDS
T03812
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE92_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoy03019
]
RE92_12145
03009 Ribosome biogenesis [BR:
ppoy03009
]
RE92_12145
Enzymes [BR:
ppoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RE92_12145
Messenger RNA biogenesis [BR:
ppoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE92_12145
Ribosome biogenesis [BR:
ppoy03009
]
Prokaryotic type
rRNA helicases
RE92_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AJE51732
LinkDB
All DBs
Position
complement(2762490..2763935)
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AA seq
481 aa
AA seq
DB search
MSQKHFADYPLSEEIVRALDSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGI
PLCELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELK
QRTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVT
MLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQVREADKLALLQDLLIVE
NPDSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADIEAY
IGFAIPQVKAPSEEAVDLHREDFERKLHVKTALKNDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKLDGVTADDIGIITILDNVTDVEILNGKGPLVLEIMKNTTVKGKLLKVRKGH
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaagcattttgcagattacccattaagtgaagaaattgtgagggctctggat
agcctgggctatgagacgccaacagaaattcaaacggaggttattcccgttgcgcttgag
aagaaggatcttgtggccaaatcgcaaacaggcagcggcaaaacagcagcatatggtatt
ccactttgtgagctagtagattggaatgagaataaaccccaagctttaattctgacacca
acccgtgaactcgcattacaggttactgaagacatcacgaatattggacgctttaagcgg
ataaaagcaacgcctctttatgggaaacatccttttcatatacaaaaggccgagctaaaa
caaaggacacatgtggctgtaggtacgcccggacgtgtactagaccatattgaacgagga
acactatctttaaatcgaattgcctatctcgtgattgatgaagctgacgagatgctgaat
atgggctttatcgagcaggttcagtcgattattcaggcgctgcctagtgaccgggttacg
atgttgttttccgctactttccccgaagatgtagccaaactgtcacgtaaatatatgaac
gatcctgtggaaattgagattaaggcgacaggtgtaaccacagccacgattgatcactct
cttattcaggtgcgggaggcggacaagctggctctgctacaggatctgctcattgttgag
aaccctgacagctgcatcattttctgtcgtacgcaggagcatgtagatacactattcaga
gcattggctgacctcgaatatccatgtgatcgcatccatggcggcatggagcaagatgag
cgatttgaggtaatgaacgcattcagaaggggacaattccgttacttgatcgcaactgat
gtagccgccagagggattgatatcacgaatatcacccatgtcatcaactacgatattccc
cttgaaaaagaaagctatgttcatcgtacaggacgtacaggacgtgctggcaaaacaggg
aaagccattactctaatcactcctaaagatagcaaacgattagctgatatcgaagcatac
attggatttgcaattccgcaagtaaaggccccctcagaagaggccgttgatcttcacaga
gaagattttgagcggaaactacatgtaaaaactgcactcaaaaacgacaaacgcgagcaa
ttaaaccaacaaattatgaagctcaattttaatggcggtaagaagaaaaaacttagagct
gtcgactttgtgggcaccatcgctaagctggatggggtaacggcagatgatatcgggatc
attacgattctggataatgtgacagatgttgagattctgaatggcaagggcccactggtg
cttgagattatgaagaatactaccgtaaagggcaagcttttaaaggtacgcaaaggtcat
aagtag
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