Paenibacillus polymyxa Sb3-1: RE92_20480
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Entry
RE92_20480 CDS
T03812
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy00470
D-Amino acid metabolism
ppoy00550
Peptidoglycan biosynthesis
ppoy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RE92_20480 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RE92_20480 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppoy01011
]
RE92_20480 (murD)
Enzymes [BR:
ppoy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RE92_20480 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppoy01011
]
Precursor biosynthesis
Amino acid ligase
RE92_20480 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Pyr_redox_3
2-Hacid_dh_C
XdhC_C
Pyr_redox
Motif
Other DBs
NCBI-ProteinID:
AJE53247
LinkDB
All DBs
Position
4623092..4624513
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AA seq
473 aa
AA seq
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MNHPDAYRDQEVVIIGLAKSGVQVAKVLHQAGAKLTVNDKKDREQCPEASELEALGISVL
CGGHPEGLIYPGVKLVVKNPGIPYTAPPVQKAVELGIEVVTEVEVAYHLCKAPIIGITGS
NGKTTTTTWVGKLLEASGMNPIVAGNIGTPLCEAAVDAKSDEWMVVELSSFQLKGTKDFK
PAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVVNWDDSVCRELVPYIQAKL
LPFSMTERLQEGLFADPPYIPDVTDDIERNIVYRDGNGVLHPIIGVTDIGLPGRFNVENA
LAACAIAIAAGAEPAKLAEPLGSFRGVEHRLEYVLEHGGVAYYNNSKATNSKATMMALSS
FKQPIVLIAGGLDRGSDYAELVPSLQEGVKAVVLLGETRHKLADRARQAGIEHVKVVDNG
EDAAATLVEAVNKAAQFAETGDVVLLSPACASWDMFQSYEERGRIFKEAAHKL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatccagacgcataccgagatcaggaagttgtcattatcggtctggccaaaagc
ggcgtacaagttgccaaggtgctacatcaggccggggccaagctcacagtcaatgataaa
aaagatagggaacaatgtcccgaagcttctgaattagaggctttgggaatttccgtttta
tgcgggggtcacccggaaggactgatttatcctggagtgaaactagttgtcaaaaatcca
ggaattccttacacggcccctcccgtacagaaagctgtcgagctcggcattgaggtcgtg
accgaggttgaggtcgcctaccatctatgtaaagctccgattatcggaattactggctcc
aacggaaagacgaccacgaccacttgggtgggcaagttgttggaggcatccggcatgaat
ccgatcgtggctggtaatattggtacgccattatgcgaggcggctgtggacgccaagtcg
gacgagtggatggttgtggagctgagcagctttcagttaaaaggaacaaaggatttcaag
cccgcagtagcctgcttgctcaatgtagctgagacccatttggactaccacggaggtatg
gaggactatgttgcatcgaaggcacgtctatttgccaatcaaacagcgtcggataccgca
gtcgtgaactgggatgattccgtctgccgggagcttgtgccctatattcaagcgaagctg
cttcctttctcaatgacggaacgtttgcaggaagggctgttcgctgacccgccatacata
ccggatgtgacggatgatattgaaagaaacatcgtataccgtgatggaaatggggtactg
catcccattataggcgtgaccgatattgggcttccgggtcgttttaacgtagaaaatgct
ctagctgcttgtgcaatcgccattgccgcaggcgcagaaccagcaaaattagcggaacca
ttaggctcttttcgcggtgtagaacatcggcttgaatatgttttagaacacggtggagta
gcttattacaacaattccaaagcaaccaattcgaaagcgacaatgatggccttatcttcc
tttaagcaacctatcgtactcattgccggaggattggatcgtggctctgattatgcggag
cttgtaccatccttgcaggaaggtgtgaaagctgttgtactcttgggtgagacacggcat
aagctggcagatcgggctcgtcaggctggaatagagcatgtcaaggtcgtcgataatggg
gaggatgccgccgctacgctcgtggaggctgtaaacaaggcagctcaatttgctgagacg
ggagatgtggtattactctcacccgcttgtgcaagttgggatatgttccaatcctatgaa
gagcgtggacgtatttttaaagaggcggcgcataaattgtaa
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