Paenibacillus polymyxa Sb3-1: RE92_22055
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Entry
RE92_22055 CDS
T03812
Name
(GenBank) DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppoy03032
]
RE92_22055
03036 Chromosome and associated proteins [BR:
ppoy03036
]
RE92_22055
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_22055
DNA replication proteins [BR:
ppoy03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RE92_22055
Chromosome and associated proteins [BR:
ppoy03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RE92_22055
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RE92_22055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-DNA_bdg
DUF2267
SIS_2
DUF937
Motif
Other DBs
NCBI-ProteinID:
AJE54133
LinkDB
All DBs
Position
5009564..5009836
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG
RNPQTGEEIEIPASKIPAFKPGKALKDGIK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaaacggatttgatcaatcaggtttctgagagcactgaattgtccaaaaaggac
gtaaccaaagcaatcgatgcagtatttgaggcgatcgctggtgcactgcaaaacggagac
aaggtacaactggtaggtttcgggaactttgaggttcgtgaacgttccgcacgtaaagga
cgtaacccgcaaacaggagaagaaatcgaaatccctgcgagcaaaattccggcattcaaa
ccgggtaaagcgctcaaagacggaattaaataa
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