Physcomitrium patens (spreading earthmoss): 112272841
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Entry
112272841 CDS
T01041
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112272841
09122 Translation
03013 Nucleocytoplasmic transport
112272841
03015 mRNA surveillance pathway
112272841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112272841
03041 Spliceosome [BR:
ppp03041
]
112272841
03009 Ribosome biogenesis [BR:
ppp03009
]
112272841
03012 Translation factors [BR:
ppp03012
]
112272841
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112272841
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112272841
mRNA cycle factors
Stress granule specific factors
112272841
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112272841
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
90S particles
Helicases
112272841
Translation factors [BR:
ppp03012
]
Eukaryotic type
Initiation factors
eIF-4
112272841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
TniB
Motif
Other DBs
NCBI-GeneID:
112272841
NCBI-ProteinID:
XP_024356765
LinkDB
All DBs
Position
19:complement(13304755..13308585)
Genome browser
AA seq
408 aa
AA seq
DB search
MAAATGGTRNRMGREELEEGENLVFETSAGVEVISSFDQMGIREDLLRGIYAYGFEKPSA
IQQRAVMPIISGRDAIAQAQSGTGKTSMIALTVCQMIDIATREVQALILSPTRELAAQTE
KVILAIGDFMNVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMTNKFMTDPVRILVKR
DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFT
VSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgcgacggggggtacgaggaatcggatggggcgagaggagctcgaggaaggt
gagaatctcgtatttgagacgagcgcgggcgtggaagtcatttccagcttcgatcagatg
ggtattcgggaggacctgttgcgaggcatttatgcttacgggtttgagaagccgtccgct
attcaacagcgagcagtgatgcctattataagtggccgggatgctatagcccaagcgcag
tctggaacagggaaaacctctatgattgccctaaccgtttgtcaaatgattgacattgca
acccgtgaggtgcaagctcttatattgtcacccaccagagagcttgctgctcagacggag
aaggtgattctcgcaatcggcgacttcatgaatgttcaagctcatgcttgcattgggggg
aagagcattggggaagatatccggaagcttgaatatggtgtacatgttgtatctggaact
cctgggagagtttatgatatgataaagagaaggacgttgcggacgcggtctatcaagctc
ctgatcttggatgaatcggatgaaatgctcagcagaggattcaaggaccagatttacgat
gtttatcgttatctgccccctgagttgcaggttgtattagtgtctgcaactttgcctcat
gaaattttggaaatgacgaacaagttcatgactgaccctgtacgaatcttggtgaaacgt
gatgagttgactctggagggaataaaacaattttttgtggccgtcgaaagagaagaatgg
aagttcgatacattgtgtgatctctatgacacacttacaattacccaggctgttattttt
tgcaacacaaagcggaaggtggactggctgacagaaaagatgagaagtaacaattttacc
gtgtctgcaatgcacggcgacatgccccaaaaggaacgtgatgcaatcatggccgagttt
cggtctggcactacacgggttctcattacaacagacgtctgggctcgtggtcttgatgtg
caacaagtctctttggtaatcaactatgatcttcccaataaccgtgaattgtacattcat
cgtattggtcgctcagggcgatttgggcggaagggtgtagctattaactttgtaaggagc
gatgacatccgaattttgcgagacatagagcagtactacagtacccaaatcgatgaaatg
cctatgaatgtagctgatttaatatga
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