Physcomitrium patens (spreading earthmoss): 112273112
Help
Entry
112273112 CDS
T01041
Name
(RefSeq) LOW QUALITY PROTEIN: prolycopene isomerase, chloroplastic-like
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp00906
Carotenoid biosynthesis
ppp01100
Metabolic pathways
ppp01110
Biosynthesis of secondary metabolites
Module
ppp_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
112273112
Enzymes [BR:
ppp01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
112273112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
GDI
Thi4
HI0933_like
Pyr_redox_2
FAD_binding_3
GIDA
Motif
Other DBs
NCBI-GeneID:
112273112
NCBI-ProteinID:
XP_073385313
LinkDB
All DBs
Position
20:7766691..7770652
Genome browser
AA seq
550 aa
AA seq
DB search
MPEKTTTRGSVRDVLAADVPPIFQKDVAQTEEYDAIVIGSGIGGLVTATQLAVRGARIIL
LEKYVVPGGSSSYFLRDGYTFDVGSXVMFGFSEKGSINLVTKSLAAVGRSLELIENPVTV
HYHLPDGLSLRVHREYDKFLAELITRFPLEEAGIRAFYNEAWKVYNSLNALELKSLEEPL
YLFGQFFKDPIACLTLAYYAPLNAGDIARKYMKDPNLLAFIDAECFIVSTAGSCRTPMIN
ASRVMCDGHYGGINYPRGGVGRIAQELADGFVECGGHLQYKANVTGILIKDGKAAGVQLS
NGKAIHAKTVISNATRWDTFQKLLKEEDMPQEERNFQNLYRKSPSFLSIHMGGRRRFCRP
GTECHHLVLEGEWSKLEEAYQTIFVSIPTVLDSSLAPPGRHILHIFTTSSIDDWQSLSPA
DYEAKKDVVADKIVSRLETALFPGLKGATMFREVGTPKTHRRYLGRDDGTYGPIPAGWPK
GLLGMPFNTTAVEGLYCVGDSCFPGQGVIAVAFSGTMCAHRVAADLGFEKKNTVLDKRLS
SLLAWFRTLA
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaagacaacaactcgtgggagtgtccgagatgtgcttgctgctgacgtccca
ccaatttttcagaaagatgttgcgcaaacagaggaatacgatgccatagtgataggttcc
ggcatcgggggtcttgtcactgcaactcaactggcagttcgaggagctcggattatactt
ctcgagaaatacgttgtccctggtggaagctccagttatttcttaagggatggctatact
ttcgatgtaggctcanntgtgatgttcgggttcagtgaaaagggatccataaatttggtg
acaaaatccctggcagccgtgggacgctcattggaactgatcgagaacccagtaactgtc
cactaccacctccctgatggtttgtcattgcgagtgcaccgggagtacgacaaattcctt
gccgagctcatcacccggtttcctctggaggaagctggcatccgcgccttctataacgag
gcttggaaggtgtacaactccttgaatgcgttggagctcaagtctttggaggaacctctg
tatttatttggtcagtttttcaaggatcccatcgcctgcttgacccttgcgtactatgca
cctctgaatgcaggcgacatagcaaggaagtacatgaaggaccccaacctattggccttt
atagacgccgagtgcttcattgtgagcactgctggttcctgtcggacgcccatgatcaac
gccagcagagtaatgtgtgatgggcactacggaggaattaactatccaagaggaggagta
gggcggattgcacaggaactcgcagatggattcgtggagtgtggcggtcatttgcagtac
aaagccaacgtgacgggtattctgataaaggacggcaaggcagccggagttcaattgtcg
aacgggaaagcaatccatgccaaaaccgtgatatcaaatgcgaccagatgggacactttt
cagaaattgttgaaggaggaggacatgccgcaggaagagaggaatttccagaatctctac
cggaagtcgccatcttttttgtccatccacatgggcggaaggcggaggttctgccgcccc
ggcacagaatgccaccacctagtactcgagggcgagtggtcgaagctagaagaggcgtat
cagacaatctttgtgagcattccgactgttctcgattcttccctagcgccgcctggacgc
catatccttcacatctttaccacatcgtcgattgacgactggcaaagcttgtctccagct
gattatgaagcgaaaaaggatgtggtcgcggacaagattgtgagcagattggagactgcc
ctatttccaggtctaaaaggtgccacaatgtttcgtgaggttggcactcctaaaacacat
agacggtatttggggcgggatgacggtacttacgggcccataccagctgggtggcccaag
ggattgcttggtatgcctttcaacaccacagctgtagagggattgtattgcgtgggtgac
agttgtttcccaggtcagggtgtcattgctgtagcattctctggtacgatgtgtgctcat
cgtgttgctgcagatcttggatttgagaaaaagaatactgtcttggacaaaaggttgagc
tctctcttagcctggttccggacacttgcataa
DBGET
integrated database retrieval system
