Physcomitrium patens (spreading earthmoss): 112273127
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Entry
112273127 CDS
T01041
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112273127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppp04121
]
112273127
Ubiquitin system [BR:
ppp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112273127
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_6
F-box
LRR_NXF1-5
Preseq_ALAS
Motif
Other DBs
NCBI-GeneID:
112273127
NCBI-ProteinID:
XP_024357321
UniProt:
A0A2K1IVK2
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Position
20:complement(11213118..11217516)
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AA seq
570 aa
AA seq
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MPPSVFPDEVLEHVLVFLDSHKDRNSVSLVCKSWYKAEGWSRRKVFIGNCYAVSSATLIR
RFPKLVSLEMKGRPRFTDFGLVPQNWGGFIQPWIQVMAEYYPGLEGLKLKRMTVSDESLR
MIAVAFPNFRSLRLTSCDGFSTDGITEITKNCRNLAVLDLQENYMDIRNGDWLKAFPESL
TSLESLNFATVKCAVDEEAFQCLEALVARCRCLKTLKVNKDISLGQLRSLLLRAPQLEEL
GTGIYNQNLSWGKLHELQGSLKRCKNLRSLSGLWEVIPMCLPTMYPVCLNLTSLDLSNVT
LMTTDFTKFISYCTKVRRLLVQDFVGDKGLAAAAFNCKELQELRVYPVGVDGYVTEQGFI
AISKGCPELRKILYFCKQMTNAAMVSFAQNCPKMTHFRLCIMKCYMEDCETGQPLDEGFG
AVCRLCVDLRRLSLSGKMTDKTFEYIGQYAKKLEMLSVAFAGDSDDGMQYVLDGCPSLRK
LEVRDCPFGDEALLTGIEKYESMRSLWMSSCHLTRDGCQFLASHNSSLNVEIIKDVDKAP
LEQGQYVEKLYVYRTIAGPRADAPHFVETL
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcccccctcggtctttccagacgaggttctcgagcatgttttagtcttcctagattca
cacaaggacagaaactctgtctcgctagtgtgcaaatcctggtacaaggctgagggatgg
agcaggcggaaagtcttcatagggaactgctatgcagtgtcttcggccactctcatcagg
agatttcccaagttggtttcccttgagatgaaagggcggccgaggtttaccgacttcggc
ctggttccacaaaattggggtggattcattcagccatggatccaggtcatggccgagtac
tatcctgggttggaagggcttaaattgaagcgtatgaccgtttctgacgagagtctgaga
atgatcgccgtcgctttccccaattttcgatctttacgtctcaccagctgcgatggattc
agtactgacgggatcacagagatcacaaaaaactgcagaaatctcgcggtcttggatctc
caagagaactatatggacatccgaaatggagactggttgaaggcttttcctgagtctctg
acatctcttgagagcctcaactttgcaactgtgaaatgcgcggttgatgaagaagctttt
caatgtctggaagctttggtggctcgctgccgatgtttgaagacattgaaggtgaacaaa
gatatatctctggggcaattgagaagtcttcttcttcgagctcctcaacttgaagagctg
ggcacaggaatatataaccaaaatctgtcatggggtaaactccacgagcttcagggttct
ctcaagaggtgtaagaaccttcggagcctctcagggctttgggaagtaattccaatgtgc
ctacctacgatgtacccagtctgtctgaatctgaccagcctagatctttccaatgttact
ctcatgaccacggatttcacaaagtttattagttattgcaccaaagtgcggcgcctgttg
gttcaggacttcgtgggtgataaaggactagcagctgcagcttttaattgcaaagagttg
caggagcttcgagtctaccctgtcggcgttgacggttacgtcactgagcagggcttcata
gcgatctccaaggggtgtcccgaattgagaaagattctgtatttctgcaagcagatgacc
aacgctgcaatggtgagctttgcccagaactgcccaaagatgacccacttccggttgtgt
atcatgaagtgctacatggaggattgcgagaccgggcagcccctggatgaaggatttgga
gcagtttgcaggttgtgtgtagatcttcggcgtttgtccctctctgggaagatgaccgac
aaaaccttcgagtatattgggcagtatgcaaagaagctggaaatgctgtccgtggcattc
gccggggacagtgacgatggaatgcaatatgtcctggatggatgcccaagtctgcgcaaa
ctggaggttagagattgtcctttcggtgacgaggccctcttgacaggcatcgagaagtac
gagtccatgcgttcgttgtggatgtcgtcgtgccatctcacccgggatggttgtcaattt
ttggcatcccacaattcatcgctcaacgtcgaaattatcaaggatgtggacaaagctcct
cttgagcaaggtcagtatgtagagaagttgtacgtttaccgcaccattgcagggccccgt
gctgatgccccgcacttcgtagaaaccttgtag
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