Physcomitrium patens (spreading earthmoss): 112273394
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Entry
112273394 CDS
T01041
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112273394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112273394
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112273394
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112273394
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112273394
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_RBM22
zf-CCCH_3
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
112273394
NCBI-ProteinID:
XP_024357877
UniProt:
A0A2K1IUP2
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Position
20:5572157..5577041
Genome browser
AA seq
774 aa
AA seq
DB search
MEDADGGLSFDFEGGLEAAVAAAGPPQTGAPQQASVNNNAQVPSSLAAPKNQQARKNYRQ
TVCRHWLRGLCMKGDACGFLHQFDKARMPVCRFFAKFGECREPDCIYKHTNEDIKECNMY
KLGFCPNGPDCRYRHQKLPGPPPSVDQNLQKIQHRVYAPNTNGTTTHHGKHTPARNSEGG
QTGGRATAEEAQPPRSSRLPAQLVAPQLPPASGMANGPIPPTSFPSIAAPLPLGYCRYFI
VKSSNRENLELSVERGLWATHRNNEAKLNDAFDSCEHVIFIFSVNETRHFQGCARMMSKI
GGVAGGGAWKYAHGTANYGRNFRLKWLKLCELSFYKTRHLRNSYNENMPVKISRDCQELE
PSVGEQLALLLYQEPDSDLMTLAKESEEKREDERARGAQEPEQEADIIPFEDNDEDELED
DDSEEDDSNSQSTSPANAGPGGRGRGPGIGRGRGMWGPQGPGFDGMGRGGRGMMNGPGGR
GLPFHPEMGGEGFGMGYDGYGMGPGEGFMGPRDGFMGPGEGFMGPGGGFMGPGGGFMGPG
DHFGGLPGPARGFPPFGHPGGPGPNFGGPEFPNFGHMDGPGPMGFPGRPPPPNGMMMGPN
GPGMMGLPHSMMGEGPMLGPDGRPPPFINGPGGPPMGGRGPPRGAMNMPFRPPFAGRGGR
GPGEQPKRRRGDRGGHNKGGAGGNKGRSNPSASTNEESSQADAGQRQQLPIGGSASYADE
EDSESEDEAPRRSRHGQAKKRRKELEGGESGDPRWDPVANQWEVNSGDPDEANL
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccgatggagggcttagttttgactttgagggcggattggaggcggctgtc
gctgctgcaggaccccctcagacgggtgctcctcagcaggcgtcggtgaacaacaacgca
caagttccgtcctcgctggctgctcctaaaaaccaacaagcgaggaagaactacaggcaa
acagtgtgcagacattggttgagaggtctatgtatgaagggcgatgcctgtgggttcttg
caccaatttgataaggcgcggatgcctgtgtgtcggttttttgccaagtttggagagtgc
cgcgagccggattgtatttacaagcacaccaatgaagatatcaaagagtgtaacatgtat
aagttggggttttgcccgaatggacccgattgtcgctatcgtcaccagaagttgccaggg
ccgccaccatctgtcgatcaaaaccttcaaaagattcaacatcgggtttacgcacccaat
accaatggaaccacaacacatcatggcaaacatacacctgctcgtaattcggagggtggt
caaacgggaggccgggcaactgctgaggaggcgcaaccacctcgctcatcccgcctccct
gcacaactagtggcacctcagttacctcctgcgtcaggaatggcaaatggacctattcct
cctacctcctttccatcaatcgctgctccactgccgctcgggtattgtagatactttatc
gtgaagagcagtaatagagaaaacttggagttatcagttgaacgaggactctgggccaca
catcgtaacaatgaggcaaaattaaatgacgccttcgactcgtgtgagcacgtcatattc
attttttcagtcaacgaaactcgacattttcagggttgcgcgcgaatgatgtctaagata
ggaggcgttgcaggtggaggagcctggaagtatgctcacggcactgcaaattatggccgc
aacttccgcttgaagtggctgaagctgtgtgaactttcattctacaagacgcgtcattta
cggaattcttacaatgagaatatgcccgtgaagatcagcagagattgtcaagagctggaa
ccaagtgtaggagagcaactggcgctcttgttgtaccaagagcctgactctgacctcatg
acactcgccaaggagtcagaggagaagcgagaagatgaaagagcacggggcgcgcaggag
cccgagcaagaagcagatataataccttttgaggacaacgatgaagatgaacttgaggat
gatgacagcgaagaggacgactctaacagtcaatccacgtctccagcaaatgcaggtcct
ggtggtcgtggtcgaggaccgggaatcggacgggggcggggaatgtggggtcctcaaggc
ccaggatttgacgggatgggcagaggaggtaggggcatgatgaatggtcctggaggaaga
ggtctacccttccacccagagatggggggcgagggttttgggatgggctatgatgggtat
ggaatgggtcctggagaaggttttatggggcccagagatggatttatgggaccgggagaa
ggattcatgggacctggtggtgggttcatgggacctggaggcgggtttatgggtcccggt
gatcattttggaggtcttccgggacctgctcgaggtttccctccgtttgggcatcctggt
ggtccaggacctaatttcggaggtccagaatttccaaattttggtcatatggacggtcct
ggtcctatgggatttccaggcagaccacctcctcccaacggcatgatgatggggccgaat
ggaccggggatgatggggctacctcatagtatgatgggagaagggccaatgttgggtcca
gacggtcgtccaccacccttcatcaatggtccaggtggtcctcctatggggggccgtgga
cctccccgaggggcaatgaatatgcctttccgcccaccctttgctgggaggggcggtcga
ggtcctggagaacagccaaagaggaggcgtggtgatcgcggtgggcacaacaaaggagga
gcaggtggtaataaaggccgttccaatccttctgcttcgacgaatgaagaaagctctcag
gctgatgcagggcaaagacaacagttgcctattggaggttctgcaagctatgctgacgaa
gaagacagtgaaagcgaggatgaagcacctcgaaggtcgagacacgggcaagcgaagaag
agacggaaggagttggaaggtggggagtctggtgatccaagatgggacccggtagccaat
caatgggaagtgaattcaggtgatcctgatgaagcaaatttatag
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