Physcomitrium patens (spreading earthmoss): 112273411
Help
Entry
112273411 CDS
T01041
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112273411
09124 Replication and repair
03420 Nucleotide excision repair
112273411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112273411
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112273411
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112273411
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112273411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
112273411
NCBI-ProteinID:
XP_024357916
LinkDB
All DBs
Position
2:complement(2335310..2342202)
Genome browser
AA seq
306 aa
AA seq
DB search
MARNPTDDVSQVVLLLDVNPFFWGAEAASGGRSNGSGGLAFDQYFQHALMFVNGILLLNH
TNRIVIIATGSSTCAFLYDSTATDGINGSSVTSKANKKTQVSRTELITKSMQEFVSKEEE
ASKESSQIQYSNISGSLSMALCYIQRVLRGPLPHPQARILCLQGSPDAPYQYISVMNSIF
SAQRNGVVIDACVVGSQHSAFLQQATHITGGIYMKPPQPDGLFEYLMMVFTTDLFSRQFL
QLPRPVGVDFRASCFCHKKTIDMGFVCSVCLSIFCKHHQTCSTCGATFSRSNSTTVTGMK
RKAPGS
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaatccaaccgacgatgttagtcaggtagttttgctgctagacgtcaatccc
tttttttggggagcagaagcggcatctggtggccgctcgaacggttctggggggcttgca
tttgaccagtatttccagcacgctcttatgttcgtgaacggcattttgttgttaaaccac
accaatagaattgtcattattgccactgggtcgagcacatgcgcttttctttatgattcg
acagcaactgatggcatcaatggcagcagcgttacatctaaagcaaacaaaaagacacaa
gtgtctcgaacagagctaataacaaaaagcatgcaggagttcgtgagcaaggaagaagag
gcttctaaagaatcttcccaaattcaatattcaaatatttctggatcattatcgatggcg
ctttgctacatccaaagagtactaagaggacctcttccacatccccaagccaggatacta
tgtctgcaagggtccccagatgctccttatcaatacatttctgttatgaactctattttt
tccgcgcagaggaatggggttgtaattgatgcctgcgttgttggaagccagcactcagct
tttctacagcaggcaacacatatcactggcggaatttatatgaaaccccctcagccggat
ggactttttgagtatttaatgatggtctttactaccgacctcttctcaaggcaatttctg
caactaccgcgacctgtgggggttgattttcgtgcttcgtgtttctgtcacaagaagacc
attgacatggggttcgtatgctcggtttgcctttcaatcttttgcaagcaccatcaaacc
tgctccacttgcggagcaacgttttcaagatcgaactcgactaccgttactgggatgaag
cgaaaagcacctggctcatga
DBGET
integrated database retrieval system
