Physcomitrium patens (spreading earthmoss): 112273630
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Entry
112273630 CDS
T01041
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112273630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112273630
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112273630
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
nSTAND_NTPase5
Longin
Motif
Other DBs
NCBI-GeneID:
112273630
NCBI-ProteinID:
XP_024358372
UniProt:
A0A7I4C8F2
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Position
20:complement(685015..693446)
Genome browser
AA seq
1410 aa
AA seq
DB search
MAPANKQTPVKSGPQRSIKSFFTKSPGKALPEASDGKKKGGLEVGHTETPKESVVKEKKK
LDMDSGITCTPGKRKAAAEVGQCEAVLEGAKTIGGEGEANDELHEVEATPAKRRRLKKVQ
DRRDSDSLVISSARERMGSAPRGAVEDSAKSVIGRRLRVYWPLDKAWYAGRVKDYNKNEE
THVIVYDDGEEEEVDIVKEKVEWLSESETVENGGGRKRPKRRLNEGANSDSESNRGYSST
GDESAGGTAAMEEEKEGRPRRGRSRRQLRSIVESDEGSGDDDDDDDADFHVESSEGKESE
QEEVEDDDEDDELNEPEEESDSDSKARKKPKKNPPSSSSKKTTGRGVKKLSQPVLSVGKG
SAALKGSSLAKGLSGATTLNSGRLETSLSFSNGIVSSDPSPLAGEAAERFGGRDSEKFKF
LGKDRKDASGRKPTDPAYNPCTLHLPADFIKGLSGGQRQWWMFKAKHMDKVLLFKMGKFY
EMFEMDAHIGAKELDLQYMKGEQPHCGFPEKNFSDNAHKLALKGYRVLVVEQTETPDQLE
KRRKETGSKDKVVMREVCAVITKGTMVDADLTRLGGEGMAMLSIVEHVSETGSPLIGLCV
VDSSTGCFQLGQFEDDPARMRLSSVLTELRPVELILPRSTLSSATSRVLRDCTRKPLVNE
MNPSDLWDSEKTLKEVISIYSGLRSDSTKNAKENLTDEELLPNVLRYVKGLGEKGKMALS
AFGVCVTYLRQALLDKALLAVGRFELLPVFDALLQDPESKVLVEQGKAGVDAAFRRIEPH
MVLDGAALENLEVLENGDGGTNGTLLAKLDHCVTPFGRRLLRAWLARPLLLEESIRQRQM
AVKDLKGVALDAVARFRKELGGLLDLERALARLYASSGSNGRNAAKVVMYEDVGKKQVLQ
FTSVLRGCRSMLQAVQNFDSCLSELSSTRLRDLLTFGKGMPDMKSTIEHFEVAFDWSEAE
LSGRILPREGVDSDFDAASSVISEVESKLDAYLEEQREHFGNSSEVVYLTVGKESYQMEV
PERFLAKVPRDFEVRSSRKGYRRYWSPAIKSFLQELAAGQEQRESALKDILMRLVRDFCK
YNSTWLSAVQTIAELDVLISISAASVYTEGPTCTPTFSEGGQQAAWFHAKGLRHPTVGQE
FSFVPNDINLGGEHHPPFMLLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEELQLAPVD
QVFVRMGARDNIMAGQSTFLVELQETATMLRSATKNSLVALDELGRGTATSDGQAIAHAV
LWGLTNTIGCRGIFSTHYHRLATEHATDPTVALHHMGCKVASTKGGLEEVTFLYKLCPGA
CPKSYGVNVARLAGMPESILQRASARSSELESSFEQRRNYQPLHGSIVCKLYKALGHYLE
NVARDPSNLESLETLMPLWAEARELVLNLS
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgaataagcagacgcctgtaaagagcggtcctcagcgttctatcaaatcg
ttttttaccaagagtcctgggaaggcgttgcctgaagcgagtgatggaaagaagaaaggt
ggactggaggtagggcataccgaaacgccgaaggagtctgttgtgaaggagaagaaaaaa
cttgatatggattcggggattacttgtacccctggaaagaggaaggctgctgctgaggtc
gggcagtgcgaagctgtgctggaaggcgcgaagacaattggcggtgagggtgaagctaat
gatgaattgcatgaagtcgaagccacgcccgcgaagagaagaagattgaaaaaagttcag
gatcgtagagattcagattctttggtaatttcgtcggctcgagagcgtatgggttctgcg
cctcgtggagctgtggaggattccgcaaagtcagtgatcggacggagattgagggtttat
tggcccttggacaaggcctggtacgcgggtcgagtaaaagattacaataagaacgaagaa
acgcatgtgatcgtttatgatgatggggaagaagaagaagtcgatatcgttaaggagaaa
gtggagtggctttcagaatctgaaacagtagagaatggtggtggacgtaagcgacctaag
cgtcgtttgaatgaaggtgcgaattccgattcggaatccaacaggggatattcaagcact
ggagatgaatcagctggcggaacagctgcgatggaggaagagaaggaaggcaggccaaga
cggggacgaagtaggcggcaactaaggagcatagtagaatctgatgagggtagtggtgat
gatgatgatgatgatgatgctgactttcatgttgagtctagtgagggtaaagaaagtgaa
caagaagaagttgaagatgatgatgaagacgatgaactcaatgaacccgaggaagagagt
gattctgacagtaaagcacggaagaaacctaagaaaaatcctccttcaagctcaagcaag
aagactactggacggggagtaaagaaattgagccagccagttttgagcgttggcaaggga
tctgcagctctgaaaggttcttcactggctaagggactttcaggagcgaccactctcaat
tctggacggttggaaacatccctaagtttctcgaatggcattgtatcaagtgacccgtct
ccgctggcgggagaagcagccgagcgatttggtgggcgtgattcagagaagttcaagttt
cttgggaaggaccgcaaggatgcttctggtagaaagcccactgatcctgcttacaatcct
tgcactctacaccttccagcagattttataaaaggactttcaggagggcagcgccagtgg
tggatgtttaaagccaaacacatggataaagttctgctgttcaagatgggaaaattctat
gagatgtttgaaatggatgcacatatcggtgcgaaggagctggacttgcagtatatgaag
ggtgagcaaccgcactgcggctttccagagaagaacttttcggacaatgcacacaaattg
gctctcaagggatatcgagttcttgttgtggagcagacagagacacctgatcagctggaa
aaacgacggaaagaaactggttcaaaggataaggtggtgatgcgtgaagtctgcgctgtg
atcacaaagggcacaatggtggatgcggatttgactcgtctgggtggagaggggatggca
atgttatcaattgtagaacatgtttcagagaccggttctccgttaattggtctctgcgtg
gtcgattcatcaaccggctgctttcagttgggccagtttgaagatgatcctgccagaatg
cgcttaagttcggtattaacagagctgagacctgtggagctgatattacctcgcagtacc
ctttctagtgctacttctcgagttcttcgtgattgcaccagaaaaccgctggttaatgaa
atgaatcctagcgatctatgggattcagaaaagactttgaaagaggttatcagtatttac
tccggccttaggagtgattcgacaaaaaacgcgaaagagaacctgactgacgaggagtta
ctgccgaatgttctcagatatgtgaaaggacttggagagaagggaaaaatggctttatcc
gcctttggagtttgtgtcacatatttgcgtcaagctttattggataaagctttgttggct
gttggccggtttgagctacttccagtttttgacgccctcctccaagatcccgaaagcaag
gtgttagtggagcagggaaaagctggagtggatgctgccttccgtagaattgagcctcac
atggtgctggatggtgctgctttagaaaacctggaagttttggagaatggtgatggtggt
acaaatggaacattgcttgcgaagctggatcattgtgtaactccttttggtcgtcgatta
ttgagggcgtggcttgcgaggcctctacttctcgaggagtctattagacaacgccagatg
gctgtgaaggatttgaagggagtggcattagatgccgttgctcgttttaggaaagaattg
ggaggattgctcgacttagaacgtgcactggctcgattgtatgccagcagtggatccaat
ggaagaaatgctgcaaaggtggtcatgtacgaggatgtaggcaagaagcaagtgcttcaa
ttcacttcggtgttgcgggggtgtcggtcaatgttacaagcagttcaaaattttgattct
tgtctttcggaactttcatccactcgcttgagggacttacttacatttgggaagggtatg
ccagatatgaaatcaaccatcgagcactttgaggtagcatttgattggtctgaagcggaa
ttgtctggacgtatactgcctcgtgaaggtgtagatagtgactttgatgctgcatcttcg
gtaatttccgaagtagagagtaagcttgatgcttacttggaagagcaacgcgagcacttt
ggcaactcttcagaggttgtgtacttaactgtgggaaaagaatcctatcaaatggaagtg
cctgaacgatttctcgcgaaggttcctcgagattttgaagtgcgttcttctcgaaagggc
tatcggaggtactggagtccagctattaagagctttttacaagagcttgctgctggacaa
gagcagcgagaaagtgctcttaaggacattctaatgcgtttggtgcgcgacttttgtaaa
tataactcaacttggctgtccgctgttcaaaccattgcagagttggatgtgctaattagc
atttcagcagctagtgtgtacactgagggccctacttgcacacctaccttttctgaaggt
gggcagcaggctgcttggttccatgccaagggccttcgccatcctacagttgggcaagaa
ttctcattcgtgccaaatgatataaatcttggtggagagcatcatccaccttttatgctg
ctgactggtccgaacatgggagggaagtctactcttcttcgacaagtatgcctggcagtt
attctagcccaggtaggggcggacgtgccagctgaggagttgcaattagcgcctgtcgat
caagtttttgttagaatgggagctagggataatattatggctgggcaaagcactttcctt
gttgaacttcaggaaacggctacaatgctgcgctctgcaacaaagaactctttggtggct
ttggacgagcttggtcgcggaacagcaacttcagatggtcaggccattgcgcatgctgtt
ttgtggggcttaactaatacgattgggtgtcgaggcatcttttctacccattatcatcgt
ctggccaccgagcacgcaacagatcctactgtggcgttgcatcatatggggtgcaaagtg
gcaagcaccaaaggtgggctcgaggaagtaacattcttgtacaaactgtgtcctggggct
tgtccaaagagctatggtgtaaatgtagctaggcttgctggcatgccagaatctatatta
caaagagcgagtgcacgctcttcagagcttgaatcttcatttgagcagaggagaaactac
cagcctcttcatggctccatcgtctgcaagctatataaagcattgggccattatctggag
aacgtagcaagagacccttccaatctggaatcgttagagacgttgatgccgctgtgggca
gaagctagagaactggtcctgaacttgtcgtaa
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