Physcomitrium patens (spreading earthmoss): 112273859
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Entry
112273859 CDS
T01041
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
KO
K14962
COMPASS component SWD2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112273859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112273859
03036 Chromosome and associated proteins [BR:
ppp03036
]
112273859
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112273859
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
112273859
COMPASS/SET1 complex (yeast)
112273859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_VPS8
NBCH_WD40
Beta-prop_SPT8
PQQ
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_SCAP
PQQ_2
Cytochrom_D1
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
112273859
NCBI-ProteinID:
XP_024358632
UniProt:
A0A2K1IQQ3
LinkDB
All DBs
Position
21:complement(3053819..3057961)
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AA seq
328 aa
AA seq
DB search
MEEKRGVALELNDTVIKRMCVGAAFKDYGGRVNSLDFHRADDLLVTASDDESIRLYDTAN
ATLLKTIHSKKYGVDQICFTHHTSSVVYSSKNGWDESLRYLSLFDNRYLRYFKGHRDRVV
SLCMSPKNDCFMSGALDHTVRLWDLRTNVCQGLLRVRGRPAVAYDQQGLVFSVAMENGAI
KLFDVRSYDKGPFDTFLVGGDTVEVSGMKFSYDGKLMLLSTSNGHIYVLDAYTGRKVHAF
TVEPNPDGAVLEASFSPDSQFVIAGSGDGSLRAWNTVSGAEVACWTNNAGVPACVKWAPR
RFMFATASVALSFWVPDLSKLQKADNGS
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaagcggggagtggcgctagagctcaacgatacagtgatcaaacgcatgtgc
gtgggcgctgccttcaaggattatggtgggagggtcaattcacttgattttcatcgcgct
gacgacctccttgtaactgcctctgacgacgaatctatacgcctctacgataccgctaat
gccacattgctgaaaacaatacatagcaagaagtatggggtagaccagatttgcttcacc
caccacaccagctcagtagtttactcttcaaagaacggatgggatgagtcgctgcgatat
ttatcattgtttgacaatcgatatttgcgctacttcaaagggcaccgtgacagggtggtc
tcactatgcatgtctcccaagaatgactgtttcatgtctggtgcactggatcacactgta
cgcctgtgggatctgcgcacgaatgtgtgtcagggacttttgcgtgtgaggggtagaccc
gctgttgcgtatgatcaacagggccttgtattttctgtagctatggaaaatggagctatc
aaactatttgacgtacgctcttatgacaagggaccttttgatacattcttggtagggggt
gatacagttgaagtgtctggtatgaaattcagctatgatggcaagcttatgctactgtca
acatccaacggtcatatctatgttttagatgcctacactggacggaaggttcatgctttc
actgttgaacccaaccctgacggtgcggtactggaggcttccttcagtccagattcgcaa
tttgttattgcagggtcgggtgatggctctttgcgagcatggaacacggtgtcgggtgct
gaggttgcatgctggacgaacaacgcaggggtgcctgcatgtgtgaagtgggcgcctcgc
cggtttatgtttgctactgcatcagttgcattgtccttctgggttcctgatttatcgaag
cttcagaaagcagataatggttcctaa
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