Physcomitrium patens (spreading earthmoss): 112274482
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Entry
112274482 CDS
T01041
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112274482
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppp01002
]
112274482
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112274482
03036 Chromosome and associated proteins [BR:
ppp03036
]
112274482
Peptidases and inhibitors [BR:
ppp01002
]
Metallo peptidases
Family M1
112274482
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112274482
Coactivators
SAGA/TFTC/STAGA complex
112274482
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112274482
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_TAF2_C
TAF2_3rd
Peptidase_M1
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
112274482
NCBI-ProteinID:
XP_024359800
UniProt:
A0A7I4C5E3
LinkDB
All DBs
Position
21:complement(10070293..10083863)
Genome browser
AA seq
1443 aa
AA seq
DB search
MAKQRKQKQKEHLPSDVEVVMSDEGFTSSCCAILHQKLCVAIDLSTQRIYGHTELKIAAK
QGGKGGGVIGLHARDLHIEQVLVDGVEAHFEILNQNNYDEVYINDGPNPAPYTKSNQEAA
DDAYKKYSGDLHVESQPELLIFPPPSKPAGPAQVTETTLEVEAVLEHGFAQTAPDTTSET
TSLVVVSTSHSEVVHIVRVDYWVEKPLSGAHFEGNLFYTNNQLRRARCWFPCVDSTLQRC
SFDLEFTVHSEYVAVSNGKLLHQVYSKEGTHLKTYVYSLSIPIAASFVSLVVAPLVVLPD
RHHSNVSHLCMPGMDATLNASVNTFHSVFSLYEEYLGAPFPFECYKQVFLPGDAVFSTSS
VGASLATFSADLLADEHIIDQAISTRIKLAHALAQQWFGIFIIPDSAGDDWLLEGLAGML
TDLFVKRFLGNNEARFRRYKANEAVCLVEVEGAPVLSPPAGLDINMCGTEKLGVLGKIRT
WKATAVVQMLERQMGPEPFRKVLQRIIMRAQDPDSKNQTLSTTEFRHFANKLGNLERPFL
KDFFPRWVESSGCPRLRMGFVYSKRRNMVELAVRRESTSIPKRVGAVGKLEIPDLKLRNS
DMGWPGMMSIRLHELDGMYDHPSLPMAGDCYQLLELQCHSKLAGRRMQRPKKGTKGEAVE
DRVDATPAQSLESPLLWVRGDPELEYLAELNLIQPEQMWINQLEKDRDVIGQVQAVAALR
AHPRTSFAVVNALNNCLIDPKVFCRVRIEAAAALASTASEGTSHMGLQNLIKYYKSRRFD
PDISLPKPNDFHDFSEYFVLEAIPGAIAEVRGNDGKSPLEASEFILHILKHNDNNGNVHS
DVYWLASVIEAVGSLEFGKQDLRTLARILKQIDRFLQYDRLMPSYNGVVATSCIRTLANI
AIRFSYALSIERVKLLLKQFKDRDKINWRVRVAALKALLDIEYYSKGLEAAVILALQLIH
SEFSFPVKSKIMKHVGRIASLIEKGSCKIGSVSVARLMTLLKSSTAFHNVMLRHSVFSFL
QVLAGRSASLYRSAEYLSKLAPKHASQDTGSAKAKNAFKLRLRPAQSPVPAQPEPLKLRL
VLPSSSKDDANRKDIDSSGSEREMDEQKGRFSIKLKLRKSSSALDGPVEDASQALEVSTG
AAPMDHHVASSPPNCMKEVNLHEVTDSNLGFSQLESSRMQLLDTQPDDSQTLLMNTICVG
VNGDIQDTSIKEMKHKDTNGTEGQIPEENEGGGSPGGFNQGNTHPGRNSRGSMEQQPPFD
MYGEDTQDGTGESSDDMNKSLNESQTVDSKLQRFNSLSGMTGAENCTRDGGLEETESQKR
VEKQCDDKKERRHDKMDKKDPKEKKKKKKKKKHDKNDSDYLEKKRKRKEEREQRHRQEGH
KSLKEEKHRKEDRDVKVEERPASDAPANNHLHLEDATIENQGVSDTMKVKFKFKKPRTSA
SNI
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagcggaaacagaagcaaaaagaacacttaccctcagatgtagaggtcgtc
atgtcggatgaaggttttacgtcatcatgttgtgcgatacttcaccagaagctttgtgtg
gccatcgatctatctacgcagcggatctatgggcacacggagttaaaaattgcagcaaaa
caaggaggaaaaggtggtggagtgatcggcttgcatgcccgtgaccttcatattgaacag
gttcttgtcgatggtgtggaagctcactttgagattcttaaccaaaataattacgatgag
gtctacattaatgatggacctaatccagcaccctacactaagtcgaatcaggaggcagct
gatgatgcgtacaagaaatactctggagatcttcatgtggaatctcagcctgaacttctt
atattccctcctccttcaaaacctgcaggcccagcccaagtaactgaaacgaccctcgag
gttgaagcagtattggagcatggtttcgcacagacagcacctgatacaacatccgagacc
acaagtttggtggttgtttctacttctcattcagaagtggtccacattgtgcgtgtggat
tattgggtagagaagccactctcaggagctcattttgaagggaatctattttataccaac
aatcagttgaggcgggcacgttgctggtttccttgtgtggactctacactgcaacgctgc
agcttcgatcttgagtttacagtccattcagagtatgttgcagtcagcaatggcaaattg
cttcaccaggtgtacagcaaggagggaacccatcttaaaacatatgtgtatagcctttca
atccctatagcggcgtcctttgtgtccctggttgttgcacctttggtggtccttccagat
cgtcatcattcaaatgtgtcccatctgtgtatgccgggcatggatgcaacgctaaatgcg
tctgtcaacacgtttcactctgtgttcagcttatatgaagagtatctgggagctcctttt
ccatttgaatgctataaacaagtatttcttcctggtgatgctgtcttttcaacaagtagc
gttggggcatccttagcaacttttagtgcggatcttttggcagatgaacacatcattgat
caggctataagtacacgcatcaagctcgctcatgctttggctcagcagtggtttggcatc
ttcataattcccgattctgcaggggatgattggctgttggaaggattggcgggaatgctt
acggatctttttgtcaagcgttttcttggaaacaatgaagcccgctttagacgctataag
gcaaatgaagccgtctgcttggtggaagttgagggagcacctgtcttaagccctccagct
gggctggatataaatatgtgtggcactgaaaaacttggtgtgcttgggaaaattagaacc
tggaaagctactgcggttgtgcaaatgttagaaaggcaaatgggtccagagccatttcgt
aaggttctgcaaagaataatcatgagggcacaagatcctgacagcaagaatcaaacccta
agcactactgagtttcgtcactttgcaaacaaattgggaaatttggaacgtccgtttttg
aaggatttcttccctcgctgggttgaatcatcagggtgtccacgtttgaggatggggttc
gtctacagcaagagacgcaacatggtagagctagctgttcgtcgggagtctacttctata
ccaaagcgtgtaggagctgtaggaaaactcgaaattcctgacttgaagctccgcaactcg
gacatgggatggcctggcatgatgagcataaggttgcatgaattagatggcatgtatgac
catccaagcttacccatggctggtgattgctaccaacttttagaacttcagtgccattct
aagctcgctggtcggcgtatgcaacgtcctaagaaaggaactaagggtgaagctgtggaa
gatcgtgtggatgctactccagctcaaagtttggagtcccctcttttgtgggtacgcggt
gatccggagctagagtatttagccgagttgaatctaattcaaccagagcagatgtggata
aaccaattggagaaagacagggatgttattggtcaagtacaagctgtagctgcattgcgt
gctcatcctcgcacatcctttgctgtagtcaatgctctcaacaattgccttattgatccc
aaggtcttctgtcgcgtgaggattgaagcagctgctgcacttgctagtactgcctcagag
gggacaagccacatgggcttacagaatcttataaagtattataaaagtcgtcgttttgat
cctgacataagtttaccgaaaccaaatgattttcacgatttctctgaatactttgtttta
gaggctattccaggagcgatagccgaagttcgtgggaatgatggcaagagcccgttggaa
gcatctgaatttattctacatatccttaagcataatgacaacaatggaaatgtacattct
gatgtatactggctagcttctgtcattgaagctgtaggttcactggagttcgggaagcag
gatttaaggacgttagcacggattctgaagcaaattgatcgcttcttgcagtatgacagg
ttgatgccgagttataatggagttgtggccacaagctgcatccgtacgttggcaaatatt
gccatacgcttttcttatgctttatctattgaacgagtaaaactgctgttgaaacaattc
aaggatcgtgataagattaactggcgagtgcgagttgccgccctaaaggcgttattggat
atagaatattactcaaaaggattggaagctgcagttattcttgcgttacaactgattcat
agtgaattttcatttccagttaagagcaaaattatgaagcatgtaggtcgcatagcttct
ctcattgagaagggcagctgtaaaattgggagcgttagtgtagcacgcttgatgactttg
ttaaaaagcagtactgctttccataatgttatgcttcgacatagtgttttctcttttttg
caggttcttgctggcaggtctgcgtcgttgtatcgatcagctgaatatctctcaaagttg
gcaccaaaacatgcatcccaagatacgggttctgcaaaagctaaaaacgcattcaaactt
cgccttcggcctgcacaatctccggttcctgctcagccagaacccctgaagttgcgactt
gtacttccaagttcttcgaaagatgatgctaatcggaaggatattgatagttctggaagt
gaacgagagatggatgagcaaaaaggaagattttcgatcaagttgaaacttcggaagtcg
tcctcagctcttgatggtccagttgaggatgcaagccaggctttggaagtatctactgga
gctgcgcctatggaccatcacgttgccagctctcctccgaattgcatgaaggaagtaaat
cttcacgaggtcacagattcaaatctaggtttcagtcagcttgaatcatccagaatgcag
ctgttagacactcaaccagacgattcgcaaactcttctcatgaatacgatttgtgtaggc
gtaaatggcgacatccaagatacaagtattaaagaaatgaaacacaaggataccaatggc
actgagggacagatccccgaggaaaacgaaggtggtggtagtcctggaggtttcaatcag
ggtaatacacatccagggagaaattctcggggaagtatggagcaacagcctccttttgat
atgtatggagaggatacccaggatggcacaggagaatctagcgatgatatgaacaaatca
ttaaatgaatctcagacggtggactcaaagcttcagcggtttaacagtctgtcaggaatg
acgggtgctgaaaattgtactcgagatggtggccttgaggaaacagaatcacaaaagcgg
gttgagaagcagtgtgatgataagaaggaaagacgacatgataagatggacaagaaagat
cccaaggagaagaagaagaagaagaagaagaagaaacatgataagaacgattcggattat
ctggagaagaaaaggaaacggaaagaggaacgcgagcagcgacaccgtcaagaagggcac
aaatccttgaaagaggaaaaacatcgaaaagaggatagagacgttaaagttgaggaaaga
cctgcttcagacgctcctgcgaataatcatttacatctggaagatgcaacaattgagaat
caaggcgtgagtgatactatgaaagttaagttcaagtttaaaaagccaaggacgtcagct
tcaaacatataa
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integrated database retrieval system
