KEGG   Physcomitrium patens (spreading earthmoss): 112275177
Entry
112275177         CDS       T01041                                 
Name
(RefSeq) uncharacterized protein
  KO
K07573  exosome complex component CSL4
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112275177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112275177
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     112275177
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     112275177
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 112275177
NCBI-ProteinID: XP_024361061
LinkDB
Position
22:complement(14084244..14087369)
AA seq 276 aa
MNVERMKTLVSMTKPPRSREQRGPRRRSWERFTVKGIGTRDRADGLPPQTLLRNRGHCCC
FFVFFVFFTIFAERGSSFAFAAVSMSSIEVFSTPGEVLGSLAVYAPGPGTYAWGGNVVSS
VVGLQRVVPPSPDAPDQRPIIEVSREKEQGAVPGPGAQVTAKIRKVQPRQAIADILCVGT
RAVKEKFRGLVRQQDVRATEIDKVDMHLSFRPGDIIRAEVLSLGDARAYFLSTAKNELGV
VSATSDAGAQMVPISWQEMQCPVTFQKEFRKVAKVV
NT seq 831 nt   +upstreamnt  +downstreamnt
atgaatgtggaacgaatgaaaactctcgtctctatgacgaagccgccgcggtcaagggaa
cagcgtggtcccaggagacggtcatgggagcgtttcacggtgaaaggaatcggcacgcgg
gaccgtgccgatggtcttcctccccaaaccttgctccggaaccgcggccactgctgctgc
ttcttcgtcttcttcgtcttcttcacaatttttgcagaacgtgggagctcgtttgcattc
gctgccgtttctatgagctccatcgaggtgttttccacgcccggcgaggttctgggctcc
cttgctgtttacgcacctgggcctggaacctatgcatggggcggcaatgtggtgtcatct
gttgtcggcctccaaagggtcgttccaccctcccctgacgctcccgatcagaggccaatc
atagaggttagcagggagaaagaacaaggagcagtaccaggacctggtgcacaggtcact
gccaagattaggaaggtacaaccaagacaagcaatcgcggacattctatgtgtggggacg
agggcagttaaggagaaattcagaggccttgtcaggcaacaagatgtgcgagcaactgag
atagataaggtggacatgcacctatcatttcgacctggtgatatcataagggcggaagtt
ctttcgcttggagatgctcgagcctacttcctttccactgccaagaacgagttgggcgtc
gtatctgcaaccagcgacgctggtgcacagatggtgccaatcagctggcaggagatgcaa
tgccctgtaacttttcagaaagagtttcgcaaggtagccaaggtagtataa

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