Physcomitrium patens (spreading earthmoss): 112275197
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Entry
112275197 CDS
T01041
Name
(RefSeq) protein transport protein SEC13 homolog A
KO
K14004
protein transport protein SEC13
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112275197
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112275197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112275197
04131 Membrane trafficking [BR:
ppp04131
]
112275197
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112275197
Membrane trafficking [BR:
ppp04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112275197
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
112275197
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
112275197
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
WD40_Gbeta
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
CSTF1_dimer
Motif
Other DBs
NCBI-GeneID:
112275197
NCBI-ProteinID:
XP_024361100
UniProt:
A0A2K1INW9
LinkDB
All DBs
Position
22:11481258..11483175
Genome browser
AA seq
306 aa
AA seq
DB search
MGSQGGEQMLESGHQDVVHDVAVDYYGKRLATCSSDRLVKVFALGASGSTPPSSALATLS
GHEGPIWQVAWAHPKFGNILASCSYDRKVIIWREGAENEWHQAQVFQEHESSVNSISWAP
EVFGLCLACGSADGTISVLSLKADGSWEKAKIEQAHPVGVTSVSWAPATAPGSLIGVDPG
AVQKLASGGCDNTVKVWKFMNGSWKLDCFPPLSKHVDWVRDVAWAPNLGLPRSTIASASQ
DGTVVIWTQAKDGDQWQPLTLNDFKTPVWRVSWSLTGNILAVSDSSNKVTLWKEEVDGEW
NQVSNV
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgcaagggggagaacaaatgctggagtcgggccaccaggacgtggtgcacgat
gtggccgtggactactacggcaaacgcctggccacctgctcctccgatcgcctcgtgaag
gttttcgcgctcggcgcttcaggaagcacgcccccctcgtcggcccttgccactctgtct
ggccacgagggccctatctggcaggtcgcctgggcgcaccccaaatttggtaacattctc
gcgtcgtgctcgtatgatcgcaaagtcatcatctggagagaaggggctgagaatgagtgg
catcaggctcaggtgttccaggagcacgagtcatcggtgaacagcatcagctgggctcct
gaagtgtttgggttgtgtctagcgtgtgggtcagcagatgggacgatctcggttttatcg
ctcaaggccgatgggtcgtgggagaaggcgaagattgagcaggctcatcctgtgggagtg
acgtctgtgtcgtgggcgcctgctactgctccgggctccttgattggggttgatcctggg
gctgtacagaagctggcgtctggtggctgtgacaataccgtcaaggtgtggaaattcatg
aatggtagctggaaattggattgcttccccccgctctccaagcatgttgactgggtgcgg
gatgttgcatgggctcctaaccttgggctccccaggtccaccatcgctagcgcatctcaa
gatggaactgttgttatctggactcaggccaaagacggggaccagtggcagccattgacc
ttaaatgacttcaagaccccagtgtggcgagtaagctggtctctaactggaaacatacta
gctgtatcagactccagcaacaaagtgacgttgtggaaagaagaggttgatggagagtgg
aaccaggtttcgaacgtgtaa
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