Physcomitrium patens (spreading earthmoss): 112275272
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Entry
112275272 CDS
T01041
Name
(RefSeq) DNA mismatch repair protein MSH2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112275272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112275272
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112275272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
112275272
NCBI-ProteinID:
XP_024361270
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Position
22:complement(591531..598317)
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AA seq
951 aa
AA seq
DB search
MDPDSMEKGDEPKLPELKLDVKQAQGFISFFRRLPENEQAVRFFDRKDYFTAHGDNATFI
ASTYYRTLTVLRQLGSGADSLPGVTINKSMFETIVRDLLLERTDCTVELYEGTGSKWQLV
RSGSPGKLGSFEEVLFASNEMQETPVVMAVNITTRQSERCVGIAFVDMTKRQLGMTEFLD
DDLYTSLESAMVALSCRECIIPMPTAAKSPDDRKLRDVMARCNVLVTEKKKSDFRSRDVE
QDLGRLVKGPAEQHKELVAASDLAAAALAALLTYTELLSDDTNYGKYVIQPYSLDLYMRL
DAAALRALNVTESKTDSNKHFSLFGLMNRTCTQGMGKRLLNRWLKQPLVDVVEITKRLDT
VQAFVEDLELRQDLRSHLRRMPDIERLVSKLEKRKAGLQDVVRLYQASLRLPLIRTCLEK
YDGEFSKDLQEKYGTHLDVWTQPNHLGKFDGLVEAAVDLEQLQNGEYIISADYDNSLQEL
KTGRDDVERQILKVHQQSADDLGLPAEKSLKLDKSTQYGHVFRITKKEEPKVRKKLNSQY
ITLETRKDGIKFTNAKLRRLSEQYTKLTEEYSSAQRELVAKVVDVAATFVEIFSGVAVLL
ADMDVLLSFADLASCSPVPYVRPSITSADEGDIILEGSRHPCVEAQDDVNFISNDCRLVR
GKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDRAEISVRDCIFARVGAGDCQL
RGVSTFMAEMLETASIIKSATERSLIIIDELGRGTSTYDGFGLAWAICEYLVEVTRAPTL
FATHFHELTALEHSNSPPVHGPPRGPLVGIANYHVSAHIDTKSQKLAMLYKVEEGPCDQS
FGIHVAEFAHFPESVVELAKQKAAELEDFSDTGKDVSGGLSKDEVGTKRKRVSGPDDKVL
GAGRVRRFLQEMAALPVDKMSREETYAKLKALKSEFDRDAATNSWLQQIVH
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggacccagatagtatggagaagggggatgagccgaagctgcccgaattgaagctagat
gttaagcaagcacaggggttcatttctttcttccgcaggcttcccgagaacgagcaagct
gtgcgcttctttgaccgcaaggattatttcactgctcatggtgataatgcaaccttcatt
gccagtacgtactataggacgctcacagttctcaggcagctggggagcggggctgattct
ctccctggtgtgaccatcaacaaaagcatgtttgagactattgtgagggatctcttgcta
gaaagaactgattgcactgttgaactctatgagggcaccggatctaagtggcaacttgtt
aggagcgggtctcctggcaagcttggcagctttgaagaggtcctgttcgcaagcaatgag
atgcaggaaactcctgtagtcatggctgtaaatattactacacgtcaaagcgagcggtgt
gttgggatagcattcgtggatatgacgaagaggcagcttggaatgacagagttcttagac
gatgacctatacaccagtttggagtccgccatggtagctttaagctgtcgtgaatgtatc
atacccatgccaaccgctgccaagtcccctgatgatcgtaaacttcgtgatgtaatggca
cgctgcaatgttttggttactgagaagaagaaatctgattttaggtcgcgagatgtagaa
caagatttaggccgattagtcaaaggtcctgctgagcaacataaagaactggtggcagca
tctgatttagcggctgctgctcttgccgcgcttctgacatatactgaactcctctctgat
gacacaaattatggaaaatacgtcattcagccctacagtctggacctctacatgcgattg
gatgcagcagctttacgagctctcaatgtcactgagagcaaaacggattctaacaagcat
tttagtctgtttggtttgatgaaccggacttgcacccaaggtatgggaaaaagattgctg
aaccggtggttgaaacaacccctagtggatgttgttgagataaccaaaaggctggataca
gtgcaagcgtttgtggaggatctagaattaaggcaggacttgcggtctcacctacggcga
atgcctgacattgagcgcttggttagcaagcttgagaagcgcaaagcgggattgcaagat
gttgtgagattgtatcaggccagtttgaggctgcctttgattcgaacctgcctggagaag
tatgacggagagttttccaaggatttgcaagagaaatacggcacccatcttgatgtatgg
acacagccaaatcatctaggaaaatttgatggattagtcgaggcagctgtcgatcttgaa
cagctccagaatggagagtatataatttcagcagattatgacaacagtcttcaagagctc
aaaactgggcgcgacgatgtggaaaggcagatacttaaagttcaccagcagtcagcagat
gacctggggcttcctgcggaaaagtcattgaagttggataagagtacacagtatggacat
gtttttaggattactaagaaggaagagccgaaggttaggaaaaaattgaatagtcaatac
ataaccttggaaactaggaaagacggcataaagttcacgaatgccaagctgcgaaggttg
agtgaacagtacacaaagctcacagaggaatactcgagtgcacagcgagagcttgttgca
aaggttgtggatgttgcagcaacatttgttgagattttctcaggagttgcagttcttctg
gctgatatggatgtacttcttagctttgctgacttagcttcctgcagtcccgtaccttac
gtcaggccctcaatcacttctgctgatgaaggtgacataattctggaaggaagtcggcat
ccatgtgtagaagcccaggatgacgtcaatttcatttccaacgattgtcgattggtgcga
ggcaagagctggtttcagattatcacaggacccaatatgggtggaaagtccaccttcatt
agacaggttggtgtgaacgtgttaatggctcaagttggatgctttgtaccatgcgaccga
gcagagatcagtgtgcgtgattgcatctttgcgcgtgttggtgctggagattgccagcta
cgcggagtgtcaacatttatggctgaaatgctggaaacagccagcattattaagtctgct
acagagcgttctttgatcattattgatgaacttggtcggggtacttcaacttacgatgga
tttggtttggcgtgggcaatatgtgagtacttagtggaggtcactcgtgcacccactctc
tttgcaacccactttcacgagctaacagctttagaacattcaaactctccacctgtccat
ggacctcccagaggtccacttgtagggattgccaactatcacgttagtgctcatatcgac
acaaaatcacagaaacttgccatgctctacaaggttgaagaaggaccttgcgaccaaagt
tttggtatccatgtagctgagtttgcgcattttcctgaaagtgttgttgaactcgctaag
cagaaagcggcagaattagaggatttctctgatactgggaaggatgtttcaggggggctt
agtaaggatgaggttggcactaagcgaaagagagtaagtggccctgatgacaaggtatta
ggagctgggcgggtgcgaaggttccttcaagagatggcagcattgcctgtagacaaaatg
agtcgtgaggagacttatgccaaattaaaggccttgaaaagtgagtttgacagagacgcc
gcaacaaactcatggctgcaacagatagttcattga
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