Physcomitrium patens (spreading earthmoss): 112275368
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Entry
112275368 CDS
T01041
Name
(RefSeq) eukaryotic initiation factor 4A-3 isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112275368
09122 Translation
03013 Nucleocytoplasmic transport
112275368
03015 mRNA surveillance pathway
112275368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112275368
03041 Spliceosome [BR:
ppp03041
]
112275368
03009 Ribosome biogenesis [BR:
ppp03009
]
112275368
03012 Translation factors [BR:
ppp03012
]
112275368
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112275368
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112275368
mRNA cycle factors
Stress granule specific factors
112275368
Spliceosome [BR:
ppp03041
]
Complex C
Other components
EJC/TREX
112275368
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
90S particles
Helicases
112275368
Translation factors [BR:
ppp03012
]
Eukaryotic type
Initiation factors
eIF-4
112275368
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
NAT10_TcmA_helicase
TniB
AAA_22
Motif
Other DBs
NCBI-GeneID:
112275368
NCBI-ProteinID:
XP_024361461
UniProt:
A0A7I4CLT6
LinkDB
All DBs
Position
22:2576331..2580032
Genome browser
AA seq
458 aa
AA seq
DB search
MRGRVLRGEGRHHNNLGETITRLSSLISQDELGFHSIASIKIAVISLLHAMAAVTGGPRN
RMGREELEEGENLVFETSAGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPII
SGRDAIAQAQSGTGKTSMIALAVCQMIDTATREVQALILSPTRELAAQTEKVILAIGDFM
NVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEML
SRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQ
FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQ
KERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR
KGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgagggagggtcttgcggggggaggggagacatcacaacaatctcggcgagaccatc
acaagactaagctctctcatcagtcaggacgaactagggttccactcgattgcatctatc
aagattgccgtaatttcgctccttcacgcgatggccgctgtaactgggggtccgagaaat
cggatggggcgagaggagcttgaggaaggggagaaccttgtatttgagaccagtgcaggt
gtggaggtcatttctagctttgatcagatgggtatcagggaggacctgttgcgaggtatt
tatgcatatggatttgagaaaccgtccgctattcagcagcgagcagtgatgcctattata
agtggtcgggatgctatcgctcaagcgcagtctggcacaggaaaaacctcaatgattgcc
ctggctgtctgtcaaatgattgatactgcaacccgtgaggtgcaggccctcatattgtca
cccaccagagagcttgctgctcaaacggagaaagtgatccttgctattggtgacttcatg
aacgttcaagctcatgcttgcattggaggcaagagcattggagaagatatccggaagctt
gagtatggtgtacatgtggtgtctgggactcctgggcgagtctatgatatgattaagaga
aggacgctgaggactcggtcaattaagctcctgattctggatgaatcggatgaaatgctt
agcagaggtttcaaggatcagatttatgatgtttatcgatatctaccccctgaattacag
gttgttttagtatcagcaactctgccccatgagattttggagatgacaaacaagttcatg
acggatcctgttcgaattctggtgaaacgtgatgagttgactttggagggaattaaacag
ttttttgtggccgttgagagggaagaatggaagttcgatacattgtgtgatctatacgat
acacttacaattactcaggctgtaattttctgcaataccaagcggaaggtcgactggcta
acagagaaaatgagaagtaacaactttactgtatctgcaatgcatggtgacatgccccag
aaagaacgtgatgcaatcatggctgagttccgatctggcaccactcgggttctgattaca
acagatgtctgggctcgtggcctcgatgtacaacaggtttctttggttatcaactacgat
cttcccaacaaccgggagctatatattcatcgtattggtcgctcaggacgatttgggcgg
aagggcgtggctattaattttgtaagaagtgacgatatccgaattttacgagatatagag
cagtattacagcactcaaattgatgaaatgccaatgaacgtagctgacttgatttaa
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