Physcomitrium patens (spreading earthmoss): 112275623
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Entry
112275623 CDS
T01041
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppp03036
]
112275623
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112275623
microRNA pathway
RISC loading complex
112275623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
ResIII
Helicase_C
PAZ
dsrm
SNF2-rel_dom
SWI2_SNF2
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
112275623
NCBI-ProteinID:
XP_024361908
LinkDB
All DBs
Position
23:2317379..2331348
Genome browser
AA seq
2054 aa
AA seq
DB search
MEMAAMGQCSGDEVDRDDPLLITTVRARLNRERKVKKVGRKIVKELVRDDNERADADNSQ
EEQGMLSPRRYQQQAFEAALNKNTILYLETGCGKTLVAVLLIKSLAKNTRLENDKRLIVF
LAPTVILVQQQARVIRIHTDLNVGEYYGSKNVDTWSRAEWQTQIAEVEVMVMTPQVFLNN
LQHGFLKMNIVELLIFDECHHAHKNHAYAQIMKGFYHVNVDKGRLPRIFGMTASPVTKKG
VKSSIGAAEQLFGLEDLLKSEVFAFKDREEIEFVVPTAITVEEYYDAPNLDILAPYKEEI
EALIIKFEKAHTDAVASVQAEFKDQTEFIYKLKERANRFHRDVQFCLEELGLWCASKAAE
YLFKVDNGLEGFGEAIQAFKRNLNLFMRETCGLLKSAVPEGWTAAQTAEELQDAVSKGYL
TPKVYHLIGVLFHKRSMKDVKRIIFVERRMAAVVLAYLVNDLQCLRENFRSESICGASIG
PHTTRREQQCTMTAFNKGEINLLVATELAEEGIDVKNCGEVIRFNLPKTLRSNIQSRGRA
RRSGSTYIVFLERGNGAQRDQFSKIKQSELSVRDEAISRVHIHASSAHNSCLPICEPLKT
YRVDCTGASVNTETSIELVNRFCSKLPRDESYTPKAEYLSQKVGLLYKCDIKLPFGSPIY
EVLGEPQRTSRLAKQATALEACTQLHKAGALDDNLLPSLDFELAADVEKIMQPKNSSGFG
TTAQKELHSVAEAEAFTGHWHTSSSGAVLFAYYMSFDIHPVEDEMHANFVLLIGAALDDD
VSKLEIELCLTRGRKAKAKLSPLGRTTLTADQLSNAKLFQTILFNGMFSKMIQPVQENRK
RKRESAISSFLTERMGLWKSNNAYLLLPAVLEGSNDVGTLAPIDWKIIQATSSVVKNLVL
PEDPDFKHSQPRKRFKFLEILTRPFSFVRRKPPVNCLTFAGNHQVATSELVDVAVLTGHT
GIIYPVLRVLHDTTAHSQFPGEKNREFKTYAEFFKIKHGRMLEHPNQPLLQLKQNHRPHN
LLPADAGKIEGPTGARKMKKIQKTEATLVEARSVEEDFEVYNMKDQANSSLSEVEKVVSK
ATMQSTSVEMPPELCVVLKFSAAIVRSAYWLPSVMHRIKSVVLASQLRRSIDAPKIPVME
VLKALTTTRCNENFNMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEAL
HKLAVDRGLSAYIRDCQFDPSRWAAPGMLAAKRVNCHCKEDNLLKPFKSTTSKVTGVFGN
ELLKDKIQTETIKPRIGLTCDKGHRYLCSKTISDVTEALIGAYLEYGRNCEGALKFMTWA
GIDVHFDSKLMEAASKASPVDLSYDYGEDLKAFEKRIGYTFKNKYLPLEALTHFSNMVGD
QIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTPGLLTSLRTASVNNERFARVAVKHRLHC
YLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFGLNGLEAPKVLGDLVESIAGAILVDTCF
DLDKVWAVMMPLLEPIVTPATLDIHPVTELEELCMSKGYSIKYGVHKEDECNSRAIYEVQ
ISDELFFRGESCKPKKKTAKKDAAVKVLAKLKRHACEDKLGHEIVNCKQEIETCEALGNS
NSTNTAQVLPNEKKEPSSAISTSSRGVFDDCSQTHKCRDIPEKEIIGWDQKLASCEVLAN
FPPADMSQIISDEKSQLCSTPSTVVSELGEGLQGIEVRTRMLPTVGLSIQTDTESLSNTT
QTKNSSLVTETCTMLATTWGGLQPKGHNRSENGSVEDAIAARHDVGEGPAKLHMSASKHD
SDKVPKVLPIPAAEDLISTNTLIAIQELSKNTLSEKRLESEDDGNRSSKMPKYYWSREVA
VTNSGTISDSSTVLHSTSHNLVKPSDEVTNLLDFCPWTAALPSGSSICEVQSQTTTSAKP
HDVVDVLKGDGIMSSFQPRSPVRANDSKLSNLHTIQGAKCSSKPVRAAPANCRQHLNELR
MKNKWLSLAFKLINEESTHNVPRMCRFRFSLTVDTGKERYESQGEAKSGKKQGQESAALA
MLTILKQNGVAIFD
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggccgctatgggtcaatgcagtggcgatgaggtggacagagatgacccgctg
ctgatcaccacagtgcgagcaagactcaacagagagaggaaggtcaagaaagttgggcga
aaaattgtgaaagagttggtgagagatgacaatgaaagggcagatgcggataattcgcag
gaggaacaaggcatgctgagccctcgaaggtatcaacaacaagccttcgaagcagcatta
aacaagaacactatattgtatttagagaccggatgtgggaaaacgcttgtcgcggtgcta
ttgataaaatctctcgcgaagaatacgagattggaaaacgacaagcgcttgattgtgttc
cttgcacccacggttattctagttcaacaacaagcgcgtgtaatcagaattcataccgat
ttaaacgtgggtgagtactacggctccaagaatgtggatacctggagccgtgcagaatgg
caaacccagatagctgaagttgaggtcatggtgatgacaccacaggtctttctgaacaac
ttacaacacggtttcttgaagatgaacatcgtcgagcttctcattttcgatgaatgccat
catgctcataaaaatcacgcctatgcccagattatgaagggtttttatcacgttaatgta
gataaagggcgattgccgaggatctttggtatgactgcatcgcctgtgacaaaaaagggg
gtgaaatcatctatcggagctgctgaacaactctttgggctagaggacttgcttaaatct
gaggtcttcgcattcaaagacagagaggagattgagttcgtagttcctactgcaattact
gttgaggagtactatgatgcaccaaatctggacatccttgcaccatataaagaagagata
gaggcgctgataattaaatttgagaaagctcacaccgatgctgtggccagcgtgcaagct
gagtttaaagatcaaaccgagtttatttataagctcaaggagagggctaatcgatttcat
cgggatgttcaattttgcttggaggaacttggtttgtggtgtgcatccaaggctgcagaa
tatttgttcaaagttgacaatggccttgaggggtttggggaggctatacaagctttcaaa
cgtaacctaaatctctttatgagagaaacgtgtggtttattgaaatcagctgtacctgaa
gggtggactgctgctcagacggcagaagaacttcaggatgctgtaagcaaaggatacttg
actccaaaggtctatcatttgataggggttttgttccacaaaagatcaatgaaggatgta
aaacgcataatatttgtggagagacgaatggctgctgtagttcttgcctacttagtgaat
gacttgcaatgtctccgcgaaaatttccgctcagaatcaatctgcggagcaagtattgga
ccacatactactcggagagaacagcaatgcaccatgactgcgtttaataaaggagagatc
aacctgctggtagccactgaacttgcagaagaaggcattgacgtcaaaaactgtggtgag
gtgatacgattcaacctaccaaaaactcttcgtagcaacatacaatctcgtggacgtgcc
cgtcggtctgggtctacttatatcgtgttcttggaaaggggtaatggggcacagagagat
caattttcgaagataaaacaaagcgagttgtctgtgagagatgaggctatttctcgagtg
cacatacatgctagcagcgcacacaacagctgtttgccaatatgtgaaccacttaagact
taccgagttgattgcactggcgcctctgtcaacactgaaacaagcattgaacttgtcaac
cggttttgttccaagttgccgcgtgacgagtcttacactccaaaagcagagtatttgtct
cagaaggtaggcttactttataaatgtgacatcaagttaccgtttggttctcctatttat
gaagtactcggggaaccacaaagaacctctcgactagcaaaacaagcaactgcattagaa
gcatgtacacagttgcataaagcaggagcacttgatgataatttattaccttcattggat
ttcgaattggctgccgatgtagaaaagattatgcaaccgaagaattcctctggttttggt
accacggcgcaaaaggaacttcattctgttgcagaagcggaagccttcactggccactgg
cacactagcagcagtggtgcagtattgtttgcctactatatgtcatttgatattcatccc
gttgaagatgagatgcacgcaaacttcgtgttgcttatcggagctgcccttgatgatgat
gtttcaaagttagagattgaactatgcttgactcggggaagaaaagccaaagctaaactt
tcaccactaggacgtactacactcacagctgatcagttgagtaatgccaagttatttcag
actatactgttcaatgggatgttcagtaagatgattcaacctgtccaggaaaacaggaaa
cgcaaacgagagtctgctatatcgtcctttcttacagagaggatgggtttatggaaatca
aataatgcttaccttctcctaccagctgtattggagggatccaatgatgttggcacttta
gcaccaatcgattggaagatcatccaagccacgtcaagtgttgtgaagaacttggtcctg
cctgaggatccggacttcaagcattctcaaccacgtaagagatttaaattccttgaaata
cttacgcgacctttcagcttcgtacgaaggaaaccccccgtaaattgccttaccttcgct
ggaaatcaccaagttgccacttcggaactcgtagatgttgcagtgttgactggtcacaca
gggataatataccctgtccttcgtgttctccacgacacgactgctcatagtcagtttcct
ggagaaaaaaatagagaattcaagacctatgctgaatttttcaaaatcaagcatggacgc
atgttggaacatccaaatcagcccctgcttcaactaaagcaaaaccaccgtcctcacaat
ttgcttcctgcagatgccggaaaaattgaaggtcccacgggtgcaagaaagatgaaaaaa
attcagaaaacggaagcgactttggtggaagcacgtagtgtcgaagaggacttcgaagtc
tacaacatgaaggatcaagcaaacagttcactcagtgaagttgaaaaagtggtttcaaag
gcgacaatgcaatctacatcagtggaaatgccgccagagttgtgcgtggttttgaagttc
tcggcagccatagtacgctctgcatattggctaccatctgttatgcatcgcattaagtct
gtcgtgcttgcctctcaactgcgacggtcaatagatgctcccaaaatacccgtgatggag
gtccttaaggcacttacaacaacccgttgtaacgaaaacttcaatatggaagcccttgag
ttgtttggggattcctttctgaaatatgccgtgagtcgaaaactatttcttgagtcaagt
acagctaacgaaggagttctgtccacaaggcgtatacgcagtatttgcaacgaagccttg
cacaaattagctgtcgaccgaggactatctgcatatattcgtgattgtcagtttgaccct
agccgctgggctgcgccaggcatgttggctgcgaagcgggttaattgtcattgtaaagag
gataatttgttgaaaccattcaaatccaccacttccaaggttacgggtgtctttggtaac
gagttacttaaggacaaaattcagacagagacaatcaaaccacggatagggctgacttgc
gacaaagggcatcgttatctctgctcaaagacaatatcagatgtgacggaagctcttata
ggtgcttaccttgaatatggtagaaactgcgaaggtgccttaaaattcatgacttgggct
ggcatagacgtgcattttgattccaagttgatggaggctgcaagtaaagcgtcaccggta
gacttgagctatgattatggggaggatttgaaagcttttgagaaaaggataggatacacg
tttaagaataaatatcttccattagaagcactgacgcatttttccaacatggttggcgat
caaattcgctgctatcagagacttgaattcctcggagacgctgtgctagactttctattg
acacgacatctgttcacatcgcatcctacctcgacccctggactcttgactagtttgcga
acggcatcagtaaacaacgagcgttttgcgcgggtagctgttaaacataggttacattgt
tatttgcggcatggatctggacggcttctgcatcagattgaagaatttgtcaagtctttc
gaggcagctgatgatgatcagaaaaatagttcatttggattgaatggactcgaagctccg
aaggttcttggtgacttggtagagagtatcgcgggagctattttagtcgacacttgcttt
gatcttgataaagtgtgggcagtcatgatgcctctgcttgagccaattgtcactccagcc
acgcttgacattcatcctgtgaccgaacttgaggaactttgtatgagcaaaggatactct
attaaatatggagtacataaagaagatgaatgtaattcaagagcaatatatgaggtccaa
atcagtgatgagctattctttcgtggagaatcatgtaagcccaaaaagaagacagctaaa
aaagatgctgctgtgaaagtattagcaaaacttaagagacacgcatgtgaagacaaattg
gggcacgagattgtcaactgcaaacaggaaattgagacttgtgaagcactgggtaactca
aattcaacaaacacagcacaagtattacccaacgaaaagaaagagcctagttctgcgata
tctacttccagtcgcggtgtttttgatgactgcagtcagacacacaaatgcagagacata
cctgaaaaggagatcatcggctgggatcaaaaacttgcgtcttgtgaagtattggcaaac
tttccacctgcagacatgtcacaaataatctcagacgaaaagtcacaactttgttccact
cctagtaccgtagtcagcgaattaggtgagggcctgcaaggtatagaagttaggactaga
atgttacctacggttgggctgagcatacaaactgatacggagtcacttagtaacactact
caaactaagaactcgtctttggttacggaaacttgcacaatgctcgcgacaacttggggt
ggacttcagccgaaaggacataataggtctgagaatggttccgtcgaagatgccatagct
gcccggcatgatgtaggtgaaggtcctgctaaactacacatgtctgcttctaagcacgat
tcggacaaagttcctaaagttttgccaattccagcagctgaggatttgatttcaaccaat
actttaattgcgattcaagagctcagtaagaatacactgtcggagaagaggttggaatct
gaagatgatggcaacaggtcatccaaaatgccaaaatattactggtcgcgagaagtggca
gtgacgaactctggaactatttcagattcttctacagtattgcattccacgagccacaac
ctcgttaagccctcggatgaggtaacgaatttattggatttttgcccatggacagcagca
ttgccttcaggaagtagtatctgtgaagttcaaagccagaccacaacttccgctaaaccc
cacgatgttgtggacgtattgaagggtgacggaatcatgtcttcctttcaaccaagaagt
ccagttcgtgcgaatgactcaaagctgtctaatttgcatacgatacaaggagcgaagtgc
agtagcaaacctgtgcgagctgccccggcaaattgcagacaacatctgaatgaacttcgc
atgaagaacaagtggctcagcctagcatttaaattgataaacgaagaaagcacacataat
gttccaagaatgtgcagattcaggttttccttgacagtcgacacggggaaagagaggtat
gaaagccaaggagaagctaaatctggtaaaaagcagggtcaggaatctgcagcattagca
atgttaactatcttaaagcagaatggtgttgctatatttgattga
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