Physcomitrium patens (spreading earthmoss): 112275935
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Entry
112275935 CDS
T01041
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp04120
Ubiquitin mediated proteolysis
ppp04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112275935
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112275935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppp04121
]
112275935
Enzymes [BR:
ppp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112275935
Ubiquitin system [BR:
ppp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112275935
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
112275935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
zf-C3HC4_2
EIF3I
zf-C3HC4
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
zf-RING_2
zf-C3HC4_3
WDR90_beta-prop_4th
zf-RING_UBOX
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_WDR75_1st
U-box
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_IFT140_1st
zf-RING_5
zf-C3HC4_4
MAP70
RING_XB3-XBAT31
zf-rbx1
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
112275935
NCBI-ProteinID:
XP_024362503
UniProt:
A0A2K1L2V2
LinkDB
All DBs
Position
2:16339123..16344902
Genome browser
AA seq
700 aa
AA seq
DB search
MEGGGPFTQGSAGPHVPSVAEVKQEPRTGSWSSEDNKYEVAMATKPALDKDFLCPICIQT
MKDAFLTACGHSFCYTCIMTHLSNKSNCPCCGLYLTNNQLFPNFLLNKLLGKASASHLVS
NASPAENLRLALQQGVDLPVKELDSLMRLLSEKKRKAEQEEAETNMEILLEFLHRSRQQK
QEELSLLQGDLQFLKEDIITVEKQRQDLLRAKEKYALKIRMIGDGPSTSMPDTLAACEKT
SKSGVTSQKRGGQGGASVPSTLLTSLSMDYRGREASTGTYKAMVGGGVSSGKNQLDSQGL
APSPAVMTMAKKRRVVAQFEDLQEAYLQRRRKVAQVQRQKQNVNEAIVRKDEEVHSAGSD
RYCSGLNDFQSVLTAFTRYSRLRVIAELRHGDLFHSSNIVSSIEFDRDDQLFATAGVSRR
IKVFEFATVVNELADVHCPVVEMSTRSKLSCLSWNKYINSHIASSDYEGIITVWDVNTHQ
SIMEYEEHEKRAWSVDFSRTDPTMLVSGSDDGKVKIWCTRQESSVINIDMKANICCVKYN
PGSSSYVAVGSADHHIHYFDVRNSHMPLYMFNGHRKAVSYVKFLSPTELASASTDSTLRL
WDVKDNCPTRTLKGHTNEKNFVGLTVNSEYIACGSETNEVFVYHKAMSKPASWHRFGSQD
AEESDDDTSHFISAVCWKSESPTMLAANSQGTIKVLVLAP
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggagggaggaggtcctttcacccagggttcagcaggacctcatgttccctccgtagca
gaggttaagcaagaaccaaggacgggctcctggtcgtctgaggacaataaatatgaggta
gcaatggcaacaaagccggccctggacaaggattttctctgccctatttgcattcaaact
atgaaggacgccttcttgactgcatgcggacacagcttctgttacacgtgtattatgaca
catttaagcaataagagtaattgtccttgctgcggattgtaccttaccaacaatcaactg
ttcccgaattttttattaaacaagttgctgggaaaggcgtccgcttctcaccttgtcagc
aatgcatcgccagctgagaatttacgacttgccctacagcagggtgtggatttacctgta
aaagagttggattcattgatgcgcttactgtcggagaaaaaacggaaggccgaacaagaa
gaagccgaaaccaatatggagattttactggagtttttacatcggtctcggcaacagaag
caagaggagcttagtcttttacaaggagaccttcagtttcttaaagaagatatcattacc
gtggagaagcagcgtcaagacttgctgcgtgccaaggagaaatatgctctgaagattcgc
atgattggggatggaccatcgacctctatgccggatacattagcggcatgcgaaaagaca
agtaagagtggagtcacttctcagaaacgaggtggtcagggtggtgcatcagttccatct
actttgctcaccagcctcagtatggattacagaggacgtgaagcttcaactggaacgtat
aaggcgatggtaggtggaggtgtatcttctggcaagaatcaattagattcgcaaggttta
gcaccctcaccagcggtgatgacaatggcaaaaaaacgccgtgtggtggctcagttcgag
gatttgcaagaagcttatttacagcgcagaagaaaagtagcacaagttcaacgtcaaaaa
caaaatgtgaatgaggcgattgtgcgcaaggatgaagaggtccattctgcaggttccgat
cggtactgttccggtttaaatgatttccagtccgttctcactgcattcacacgctacagt
cgactgcgtgtaattgcagagttacggcacggagatttatttcattcttcaaatattgtt
tcaagcattgagtttgatagggatgatcagttgtttgcaacagctggagtttcaaggcgg
attaaagtttttgaatttgcaacagttgtcaatgagttggctgatgtccactgtccagtg
gtggaaatgtcaactaggtcaaaattaagctgccttagttggaacaaatacatcaattca
catatcgctagcagtgattatgaggggattattactgtctgggatgttaatacgcatcag
agcattatggaatatgaggagcatgaaaagagggcctggagtgtggatttttcacgaact
gatccgaccatgctagtctcgggaagtgatgatggcaaggtgaagatatggtgcacgagg
caagagtcaagcgtgataaatatagacatgaaggcaaatatttgctgtgtgaagtataat
cctggatcaagcagctatgttgcagttggttctgcggatcatcacattcattattttgat
gtgcgcaattctcatatgcccctgtatatgttcaatgggcaccgaaaagctgtttcgtat
gttaagttcttatctccaacagagttggcttctgcatccaccgacagcactttacgtctt
tgggatgttaaagataactgcccgacaaggacactgaaaggacacaccaatgaaaagaac
tttgttggattgactgtcaacagcgaatacatcgcctgtggcagtgaaacgaacgaggtg
tttgtgtatcataaggccatgtctaaaccggcatcttggcataggtttggatctcaagac
gctgaggagagtgatgatgatacctctcacttcataagtgctgtgtgctggaaaagcgag
agccctaccatgcttgcagccaactctcaaggcacaatcaaagtcttggtccttgctccc
tga
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