Physcomitrium patens (spreading earthmoss): 112276003
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Entry
112276003 CDS
T01041
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03030
DNA replication
ppp03420
Nucleotide excision repair
ppp03430
Mismatch repair
ppp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112276003
03420 Nucleotide excision repair
112276003
03430 Mismatch repair
112276003
03440 Homologous recombination
112276003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppp03000
]
112276003
03032 DNA replication proteins [BR:
ppp03032
]
112276003
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112276003
Transcription factors [BR:
ppp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112276003
DNA replication proteins [BR:
ppp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112276003
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112276003
MMR (mismatch excision repair)
112276003
DSBR (double strand breaks repair)
HR (homologous recombination)
112276003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
zf-CCHC
tRNA_anti-codon
zf-CCHC_3
zf-CCHC_2
TMEM219
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
112276003
NCBI-ProteinID:
XP_024362678
LinkDB
All DBs
Position
23:complement(11132187..11137205)
Genome browser
AA seq
863 aa
AA seq
DB search
MGMLLTSNAIVALNNGDVELRPVLQIVDVRQIGNSQTTTERFRLVLSDGVHLQQAMLATQ
LNEKVKNNLAVKGSIVQLLEYICNTVQNRKIIIVLNMEIVETKAEIIGDPKHLIAGGEHQ
APGPGPGPGPGSLQPQQPPPRISTPSSATVSANSGSSFRPTAINIGQTLGTGLADGTGGF
NMGQAPASPYNPYSSAGVGVKPESGLHNNAAGNGAGAGYGQQGQPQNSYGRPMAAYQPAP
VYGNRGPIVKNEAPARIIPIAALNPYQGRWTIKARVTSKGEIRRFHNAKGEGKVFSFDML
DADGGEIRATCFNNVVDQFHDRIEVGKVYLISKGSLKAAQKNFNHLKNDWEIFLESQSTI
EPCYDEDSSIPQQHYDFRPISEVATLENNAMIDIIGVVMSITPTVTITRKNGLETQKRSL
QLKDMSNRSVELTMWGNFCNKEGQELQDLCDSGANPVLAVKAGRVSDFSGKSVGTISSTQ
LVINPDHPEARKVRDWFNREGMNSTTVFLSREGGGGGRLEQRKTVAAIKDEGLGRGDKPD
WITIRATVFYIKPENFCYSACPLEVNGKQCMKKVTNNGDGTWRCDRCDRSVPECDYRYLL
SIQVQDHTGPTWITVFQETGEELMHHTAKELFLWSQDEPQRFSEAIQKLTFMKHIFKLKV
KEETYNDEQRTKSTLVKVDPMDWISESKLMLGWIKNLNSGEPDHRVAGIKSAAGVYPSAT
PAYGASVYTPTVKPAVEAQNSYGGTSGGYGGFAGGGSYGGGSGGGSSTQCYKCKQEGHFA
RDCPNSGGGGGSYGGGSAGYGGGTGGGFGGGGGNCFKCGQSGHFSRDCPNQAGGGGYGER
STVGGTYGGGYGGSRGAGYGGGY
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggggatgttactcacgtccaacgccatcgtggcgctcaataatggtgacgtcgaactg
cgccccgtgctccagatcgtcgacgttcgtcagatagggaattcacagactacgacggag
cggtttagattggttctttcggacggcgtgcaccttcagcaggcaatgttggcgacgcag
ctgaatgagaaagtaaaaaataatctggccgtcaagggatcgattgtgcagctgctggag
tatatatgtaacactgttcagaatagaaagattattatagtgcttaacatggaaatcgtg
gagactaaggctgaaattatcggtgatccaaagcacctgattgcaggcggagagcatcaa
gcacctggtcctggtcctggccctggtccaggaagtcttcagccgcagcaaccaccgccg
cgtatttctactccttcgagtgcaacagtttctgctaacagtggctctagtttcaggcct
acagctataaacataggtcaaactcttgggacggggttggctgatggtactggagggttt
aatatgggtcaagcacctgcaagtccctacaatccatattcctctgcaggcgtaggagtg
aagccagagtccgggttacataataatgcagctggtaacggagcaggagcgggatatggt
cagcaaggtcagccccagaattcttatggacgccctatggctgcctatcaacctgctccg
gtgtacggtaaccgaggacccattgtaaagaatgaagcgcctgcaagaatcattccgatt
gctgcactgaatccttatcagggtcgttggacgatcaaagctcgagttacatctaagggg
gagatccggcgctttcacaatgcaaaaggggaaggcaaagtattctcctttgatatgctg
gatgcagatggtggagagattcgggcaacatgttttaataatgttgttgatcaatttcat
gaccgtatcgaagtaggtaaggtgtatttaattagtaaaggttctttgaaggctgctcag
aaaaacttcaaccatctgaagaacgactgggaaatatttttggaatcacaatcaacaatt
gaaccctgctatgacgaggattcatcgatacctcaacagcattatgactttagaccaatc
tctgaagttgcgacgttggaaaataatgctatgatagacattattggagtggttatgtca
atcactccaactgtcacaatcacgcgcaagaatggccttgagactcagaaaagaagttta
caattgaaggatatgtcaaaccgtagtgtagagcttacgatgtggggtaatttttgtaac
aaggaagggcaagaattgcaagacttgtgtgattcgggggccaatccggtgttagctgtg
aaagctggtcgagttagtgacttcagtggcaagtccgtgggcacaatctcttccacacaa
ttggttataaatcctgatcatccagaagcacgtaaagtgcgagattggttcaatcgggaa
ggaatgaattcaacaaccgtctttctgtctagagaaggtggaggtggagggcggctggag
cagcgtaaaactgtcgcggctatcaaggatgaaggactaggtcgaggtgataagcccgat
tggattacaataagagcgactgtcttctatattaaaccagagaatttctgctattcagcc
tgtcctcttgaggtgaacggcaagcagtgtatgaagaaagttacaaataatggagatggt
acatggcgctgtgatagatgtgatcgttctgtgcccgagtgtgattacagatatctgctg
agtattcaagttcaagatcatacaggtccaacatggataacagtttttcaagagactgga
gaggagctcatgcatcatacagcgaaagagctttttctgtggagtcaagatgagccacag
cgatttagtgaagctatacagaagcttacatttatgaaacatatattcaagttaaaggtc
aaagaagaaacatacaatgatgagcaaagaaccaagtccacattggtgaaagtagaccct
atggattggatttcagagagtaagctaatgctaggttggatcaaaaatctgaattcaggg
gagccagatcatagagtggctggtataaagagtgccgcaggtgtttacccaagtgcgaca
cctgcctatggtgcgtccgtttatacaccaactgtaaaaccagctgtggaggcacagaat
agttatggaggcacatctggtggttatggtggtttcgctggaggtggctcttatggggga
gggtctggcggcggaagtagtacgcagtgctataaatgcaaacaggaaggacattttgcc
agagattgtccaaattctgggggaggaggtggcagctatgggggaggatctgcaggatac
ggaggtgggactggtggcggatttggaggaggtggaggcaattgttttaaatgtggtcag
agtgggcatttctctagagactgtcctaatcaggcaggaggtggtggttatggtgagaga
agcactgttggagggacctatggtgggggttatggtggaagtcgaggggctggctacggt
ggtggctattga
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