Physcomitrium patens (spreading earthmoss): 112276041
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Entry
112276041 CDS
T01041
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112276041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112276041
03009 Ribosome biogenesis [BR:
ppp03009
]
112276041
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112276041
Spliceosome [BR:
ppp03041
]
Complex A
U2 snRNP components
U2 related factors
112276041
Complex B
112276041
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112276041
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
90S particles
Helicases
112276041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
AAA_30
T2SSE
SRP54
AAA_7
FtsK_SpoIIIE
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
112276041
NCBI-ProteinID:
XP_024362762
LinkDB
All DBs
Position
23:complement(8617384..8622371)
Genome browser
AA seq
717 aa
AA seq
DB search
MAGERKRKLSLFDVVDEAANGSEKSKGNGGGGPVLNPHTGRPYSAKYFEILEKRRTLPVW
QQKAEFLSILAKNQTMILVGETGSGKTTQIPQFVVEAGYTTNRKQVACTQPRRVAAMSVS
RRVADEMDVTIGDEVGYSIRFEDCSGPKTTLKYLTDGMLLREAMTDPLLERYRVIILDEA
HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQAYFSGAPLMKVPGRLHPVEIF
YTQEPERDYLEAAIRTVVQIHICEPPGDILVFLTGEEEIEDACKKIGREVQNLGDQVGPV
KAVPLYSTLPPAMQQKIFDAAPPPAKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA
KQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFQNDLQPQTYPEI
LRSNLANVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTKLGELM
SEFPLDPQMSKMLVVSPEFNCSNEILSVTAMLSVPNCFMRPRDAQKAADEAKARFSHIDG
DHLTLLNVYHAFKQNGEDATWCFENFINARALKSADNVRTQLVRIMNRYNLKMCSTDFNS
RDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQMVHLHPSSCLDHKPEWVLYNEFVLT
TRNFIRIVTDVRGEWLIDVAPHYYDLSNFPQCEGRRVLERLYLKREREKTETKSGKR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgagaggaagaggaaattgagcctgttcgatgtggtggacgaggctgcgaac
gggagcgagaagtcgaaagggaatggcggtggtggtcccgtgctgaaccctcacaccggc
aggccctactctgccaagtatttcgagattttggagaaacggcggacactgcccgtttgg
caacagaaggcggagtttttgagtattttggccaagaatcagacgatgattctcgttgga
gagactgggtccggaaagaccacacagattccacaatttgtggttgaagcagggtacacg
accaacaggaagcaagtggcttgcactcagccaaggagggtggcagctatgtccgtgtcc
cgacgtgttgctgacgagatggacgtgacgattggagacgaagttggttacagcatccgt
ttcgaggattgcagcggtccgaagaccactctgaaatatttgaccgacggtatgcttttg
cgagaggctatgaccgatcctttgctggagcggtacagagtgatcatccttgatgaagcc
cacgagaggaccttggccacagacgtgctattcggtcttctcaaggaggtgttgaagaac
aggccagatctgaagcttgtggtgatgagtgccacattggaggcggaaaagtttcaggcg
tatttcagtggggccccgcttatgaaggtccctggcaggttgcaccccgtggagatattt
tacacccaagagcctgagagagattacttggaggctgcgattcggacggtggtccagatc
cacatttgtgaaccgcccggagatatcctggtgtttctgacgggagaggaggagattgag
gacgcgtgcaagaagataggtcgggaggtgcagaacttgggggaccaagtgggaccagtg
aaggcggttccactgtactccacgctgccgcctgccatgcagcagaagatcttcgatgca
gcgccgccaccagcaaaggaaggaggtccaccaggtcggaagattgtggtttcgacgaac
atcgcggaaacgtctctgaccatagacgggatcgtgtatgtgatcgatcctgggtttgcg
aagcagaaggtgtataatcccaggattcgagtggagtcgctgttggtttccccgatttcg
aaggctagcgctcatcaaagggcgggacgtgcaggtcggacgcagccaggaaagtgcttc
aggctgtacacggagaagagtttccagaacgatctgcaaccgcagacgtaccctgagatc
ttgcggtcgaatttggcgaatgtggtgctgacgctgaagaagttaggcatcgacgacctg
gtgcattttgacttcatggaccctcctgcaccggagacgctgatgagggcgctggagttg
ctgaattacttggcagccctggacgatgatgggaacctgacgaagttgggggagctgatg
agcgagttcccactggatccgcagatgtcgaagatgctggtagtgagcccggagttcaac
tgctcgaacgagattctttcagtaactgcaatgttatcagttcccaattgcttcatgcgg
ccaagggatgctcaaaaagcagctgacgaagctaaggctcggttttcgcacatcgacgga
gaccacctgacgcttctgaacgtgtatcacgcattcaaacagaacggtgaggacgccacc
tggtgttttgaaaatttcatcaatgcgcgagcgttgaagtctgccgacaatgttcggact
cagctggtgcgcatcatgaatcggtacaacctgaagatgtgcagcacggacttcaacagc
cgggattattacgtgaacattcggaaagctatgctggcggggtactttatgcaggtggcg
catttggagcgcactggtcactacctgactgtgaaggacaatcagatggtccatctacat
ccatccagttgtttagaccacaaaccagaatgggttctatataatgagtttgtacttaca
actcgaaattttattcgaatagtcacagatgtgcgcggggaatggttgattgacgttgct
ccgcattactatgatttaagtaactttcctcaatgcgaaggtagacgtgtgctcgagcga
ctatacttgaagcgcgagagagaaaaaacggagactaagagcggcaaaaggtag
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