Physcomitrium patens (spreading earthmoss): 112276520
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Entry
112276520 CDS
T01041
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112276520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112276520
Spliceosome [BR:
ppp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112276520
Complex C
U5 SnRNP specific factors
112276520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
112276520
NCBI-ProteinID:
XP_024363680
UniProt:
A0A2K1IHM2
LinkDB
All DBs
Position
24:complement(13682683..13691436)
Genome browser
AA seq
2334 aa
AA seq
DB search
MMDPQAPPTAPQQTAASAAADAEAHLEEKARKWHQLNSKRYGEKRKFGFVETQKEDMPPE
HVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVRVLYHITG
AITFVDEIPWVVEPIFLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLD
VDPLEPIQLELDEEEDAAVYEWFYDYKPLVKTKLINGPSYRRWHLSLPIMAALHRLAGQL
LSDLIDRNYFYLFDMESFFTAKALNLCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIR
SPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKSEDPDLPAFYFDPLIHPIAFYKTD
KRGEKKGFQEEEDEDDFVLPEGVEPLLQDVPQYTDTTAAGIALLFAPRPFNMRSGRMRRA
EDIPLVSDWYKEHCPPTYPVKVRVSYQKLLKCYVLNELHHRPPKGQKKKYLFRSLRATKF
FQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFG
NAFHLCREILRLTKLVVDANIQFRLGNVDAYQLADGLQYTFSHVGQLTGMYRYKYRLMRQ
IRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGVVPLLERWLGNLLARQFE
GRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWK
ANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTR
LWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLIL
ALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDL
YSHLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINN
LQDIWDTSEGQCVVMLQTKFEKFFDKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKD
MSHTNSYGLLQGLQFASFVVQYYGLVLDLLVLGLTRASEIAGPPQMPNEFITFWDVKVET
RHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMR
LMKHDVNLGRSVFWDIKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIR
MTQEAFGSKDGVWNLQNEQTKERTAMAYLRVDDEHLKVFENRVRQILMSSGSTTFTKIVN
KWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKE
IGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEDEQLIPNLYRYIQPWESEFID
SQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTD
FKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGL
FWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIF
MHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYK
MNSSCADILLFAAYKWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTR
AKFLDYTTDNMSIYPAPTGVMIGLDLAYNLHAAFGNWFPGSKPLFAQAINKIMKANPALY
VLRERVRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTK
PINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQI
IVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYD
DWLKTISSYTAFSRLILILRALHVNNEKAKMLLKPDKTVVTEPHHIWPNLSDDQWMKVEV
ALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTA
VTTKTTNVHGDDLIVTTTSPYEQAAFGSKTDWRVRAISATNLHLRVNHIYVNSDDIKESG
YTYIMPKNVLKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIVMPPQWGTHQQVHLPA
NLPEHEFLNELEPLGWLHTQPNELPQLSPQDLTSHARVLENNKQWDGEKCIILTCSFTPG
SCSLTAYKLTPTGYEWGRANKDSGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNY
NFMGVKHSVGMKYGIKLSIPREFYHEDHRPTHFLEFSNLEDNDAAEGDREDVFT
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcctcaggcgccacctacggctccacagcaaacggctgcttcagctgcagct
gatgccgaggcgcatttggaagagaaggctaggaagtggcatcaattgaatagcaagcgg
tatggggagaagcggaagtttggttttgttgagacgcaaaaagaagacatgcctcccgag
catgttcgcaaaattatcagggaccatggtgacatgtcctcgaagaagtatcgccatgat
aagcgggtatatctaggggccttgaagttcgtgcctcatgctgtgtataagctgttggag
aacatgccaatgccatgggagcaggttcgagatgtgagggtgctctatcatatcactggt
gctataacatttgttgacgagatcccgtgggtggttgagcctattttcctagctcagtgg
ggtactatgtggatcatgatgagacgagagaaaagagacagacgtcatttcaagcgtatg
cgttttccccctttcgatgatgaggagccccccttggattatgccgacaacctgttggat
gttgacccgttggaacctattcagctagagcttgacgaagaagaagacgctgctgtgtat
gagtggttctatgattataaacctctcgttaagacgaagctaatcaatggacccagttac
aggcgctggcatctttcgttgcctatcatggccgctcttcaccgtcttgctgggcagttg
ctgagtgatttgattgatagaaactatttctatctttttgatatggaatcgtttttcacc
gccaaagcactcaacctttgtattccaggaggtcccaagtttgagcctttataccgggat
atggagaagggagacgaagattggaacgagtttaatgacatcaacaagctcattattcgc
tctccattgcgtacggaatacaggattgcgtttccgcatttgtataataatcgtcctcgc
aaagtgaagctttgcgtgtatcacactcccatggttatgtacatcaagtcagaagatcca
gatttgccagccttttattttgatcctttgatccatccaattgctttttacaaaacggac
aagcgtggtgagaagaagggatttcaggaagaagaagatgaagatgacttcgttttgcca
gaaggtgttgagcctttgcttcaggatgtaccacagtacactgacacaacggctgccgga
attgctttgttgtttgctccccgcccctttaatatgcggtcaggtcggatgagacgcgcg
gaggatatccctctggtctctgattggtacaaggagcactgtcctccaacctatccagtg
aaggttcgtgtgagttatcagaagcttttgaagtgttatgtgctgaatgagctgcatcat
cggccaccaaagggccagaagaagaaatatttgttccgctcattgcgtgcaacgaagttc
ttccagacaacagaactggactgggctgaagcaggtttacaggtatgcaagcaaggatac
aatatgttgaatcttctgattcacagaaagaacctaaattatctacatttggattacaac
ttcaatctcaaacctgtgaagactcttactactaaagagaggaaaaagtctcgatttggg
aatgcttttcatctttgtcgagagattttacgactcactaagctggttgtggacgcaaac
atccaatttcggctcgggaatgttgatgcttaccaacttgcagatggtctacaatataca
ttctcacatgttggtcaactgaccggcatgtatcgttacaaatataggcttatgaggcag
atccgaatgtgcaaagatttaaagcatttgatctattatcggttcaacaccggtcccgtt
ggaaagggtcctggctgcggattttgggcacctatgtggcgtgtgtggttgttcttcctt
cgaggggttgttcctctattggaaagatggttgggcaatcttcttgcacgacaatttgag
ggtcgtcactctaagggagttgccaagactgtcaccaagcagcgggtggagagtcacttt
gatttggagctcagggcagcagtcatgcatgatgtccttgatgccatgccagaaggtatc
aagcagaataaggcccgtaccattcttcagcatctgagtgaagcttggcgttgctggaag
gctaatattccatggaaagtccctgggcttccagtgccaattgagaacatgattttgcgg
tatgtgaagtcgaaggctgattggtggactaatgtcgctcattacaatcgggagcgtatt
cggcggggtgccacagtagataaaaccgtttgccggaagaatcttgggcgtctaactcgt
ctttggctgaaggcagaacaagaacgtcagcacaattatctgaaggatgggccttatgtc
actcccgaggaagctgtggctatttacaccacaacggtacattggttggaatctcgcaag
ttttcacccattccttttcctcccctctcatacaagcatgacaccaagcttctcatcctt
gccttggagcgtcttaaggagtcgtatagtgtggcagtccgtctaaatcagcagcaaaga
gaggagcttgggctaattgagcaagcttatgataacccacacgaggcattatctcgtatc
aagcggcatttgcttacacaaagagccttcaaggaggtcggaatcgagttcatggatctc
tacagccatcttattcctgtatatgagatcgaacctttggagaagatcactgacgcttat
cttgatcagtatttatggtatgaaggagacaagagacatttgttccctaattggatcaag
cctgctgactcggaacctcctccattacttgtctacaagtggtgtcaaggtatcaacaat
ctgcaggatatatgggacaccagtgaaggacaatgtgttgttatgctgcagactaagttc
gaaaagttcttcgacaaaattgatttgaccatgctgaataggcttctacgattggttctt
gatcataacattgctgactatgtgactgcaaagaacaacgttgttctatcctacaaagat
atgagtcacacgaattcttatgggctgcttcaggggcttcagtttgcatcatttgtagtc
cagtattatgggctggtgcttgacttactggttttgggtcttacacgtgctagtgaaata
gcgggacctccgcaaatgccgaatgagtttatcactttctgggatgtgaaggtggagact
cgtcatcccatccgcctctactcacggtatatcgacaaggttcacatactcttccgtttc
actcacgaagaagccagggatctcattcaacgttatctgacagagcatccagatcccaac
aatgaaaacattgtaggttacaacaacaagaagtgttggcctagggatgctcgtatgcgg
ctcatgaagcacgatgttaatctcggaagaagtgtattctgggatataaagaaccgactt
cctcggagcataaccactttggagtgggagaattcgtttgtttccgtttacagcaaggat
aacccgaatctgctgttcagcatgtgtgggtttgaagtacgcattttaccaaaaatccgt
atgactcaagaagctttcggcagcaaggatggagtatggaacttgcagaacgagcaaacc
aaggagcggactgctatggcttatcttcgagtggacgatgaacacctgaaagtctttgag
aatcgtgtccggcagattcttatgtcatctggttctacgactttcactaaaattgtaaac
aagtggaacactgccctcattggtttaatgacctatttcagggaagcgacagttcatact
caagagcttcttgatcttctggtaaagtgtgaaaacaagatacagactcgtatcaaaatt
ggactgaattccaaaatgcccagtaggttccctcctgtgattttttatacgcccaaggag
attggtggtcttggtatgctgtcaatgggacatattttaattccccagagtgacttgaga
tacagtcagcagacagacgtcggagttactcacttccgaagtggtatgagtcatgaagat
gagcaactgattcccaatctttaccgctatattcagccgtgggaaagtgagttcattgac
tcacagcgtgtgtgggcagagtatgctctgaagagacaggaagctcaggctcagaacagg
aggttgactttggaggatcttgaagattcttgggacaggggtatacctcgtattaacacg
ttgtttcagaaggaccgtcatactctggcctatgacaagggttggcgtgtgcgtactgac
ttcaagcaataccaagtattgaagcagaatcctttctggtggactcatcagcggcacgat
ggtaagttgtggaacttaaacaattaccgtactgatgttatccaggctcttggaggagtg
gaaggtattttggagcatactctgttcaaggggacatatttccctacatgggaaggtctt
ttttgggaaaaggcatcaggttttgaggaatccatgaaatataagaagctaacaaacgct
cagcgttctggtttgaaccaaattccaaaccgtcgttttacactttggtggtccccgacc
attaatcgagccaatgtgtatgttggtttccaagtgcagcttgatcttacaggtattttc
atgcatgggaagattcctactctgaagatttctctcattcagatctttagagcgcatttg
tggcagaaggtgcacgagagtgtggtaatggacctttgccaggtcctcgaccaggagctt
gatgctttggagatcgaaacagtacaaaaggaaactattcatccgcgtaagagttacaag
atgaacagttcttgtgctgatattcttttgtttgctgcttacaagtggcctatgagcaag
ccaagtctcgttgcagaaccgaaggatgtttttgaccagaaagcaagcaacaaatactgg
atcgatgtgcaattacggtggggtgactatgattctcatgatatcgaacggtatacccgg
gctaaattcttggattatactactgataacatgtcaatatatccggctcctacaggggtg
atgatcgggctggacttggcgtacaatctgcacgctgcgtttggaaattggtttcctggt
tccaagccgctatttgctcaggctatcaacaagattatgaaggctaatccagcactctat
gtgttgagggagcgtgtaagaaaaggattgcagttgtattcatctgagcccactgagcct
tatttgtcatcccagaattacggagaacttttcagcaaccagatcatctggtttgttgat
gatactaatgtctatcgagtaaccattcacaagacatttgaaggaaatttaaccacgaag
cccatcaacggtgccattttcatcttcaacccaagaacagggcagctgtttttgaaggtc
attcataccagcgtttgggcaggacagaaacgtctgggacaattagctaagtggaagact
gctgaagaagtggctgccttggtacgttctctgccagtcgaagaacaacccaagcagatt
attgtgacacggaagggaatgcttgatcctctggaggttcatcttcttgatttcccgaat
atcgtcatcaagggtagtgagttgcagttgccattccaagcttgtttgaagattgagaag
tttggcgatttgatattgaaagcaacggagccacaaatggttttgttcaacatctatgat
gactggctgaagaccatttcgtcttatactgcgttctcgaggctcatcctaattcttagg
gctcttcatgttaacaatgaaaaggctaagatgttactgaagcctgacaagacagtagtg
acagagccacaccacatttggcctaatctcagtgatgatcagtggatgaaggtcgaagtt
gctttgagggatctaatattgtcggactatgcgaagaagaacaacgttaatacatccgcg
ttgacacagtcggagattcgggacattatcttgggcgctgagattactcctccttcgcaa
caacggcaacagattgcagaaattgagaagcaggcgaaggaggctagtcaattgactgca
gttacaacaaagacaacgaatgttcacggagacgatttgattgtaacaacaaccagtccg
tatgaacaagctgcttttggttccaagacggattggagggtgagagctatttctgctacc
aatctccatctgcgtgtcaaccacatttatgtgaactcggatgatatcaaagagtcggga
tatacgtacattatgccgaagaacgttttgaagaagtttatttgtatcgccgatttgagg
acacaaatcgcggggtatctgtatggagtgagtcctcctgataatccgcaggtgaaagag
attcggtgcattgtgatgccgcctcagtggggtacacatcaacaggttcacctccctgct
aatctgcctgaacatgagttcttgaatgagcttgagcctcttggttggcttcatactcaa
ccgaacgagctcccgcagctctcacctcaggacttgacaagtcatgcccgcgtgctggag
aataacaagcaatgggatggtgaaaagtgcatcattctaacttgcagctttactcctggt
tcgtgctcattgacagcttacaagcttacacccactggttatgaatggggtcgggctaat
aaggacagtggtagcaacccccatggttacttacccactcattacgagaaagtacagatg
cttttgagtgaccgattccttggcttctacatggttccagataacggtccatggaattac
aatttcatgggtgtgaaacactccgtcggcatgaagtatggaattaaactttcgattcca
agagaattttatcatgaagatcataggccaacgcactttttggagttcagcaatttggag
gacaatgatgctgcagagggagatcgtgaagacgtgtttacttag
DBGET
integrated database retrieval system
