Physcomitrium patens (spreading earthmoss): 112276561
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Entry
112276561 CDS
T01041
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112276561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112276561
03041 Spliceosome [BR:
ppp03041
]
112276561
03036 Chromosome and associated proteins [BR:
ppp03036
]
112276561
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112276561
Spliceosome [BR:
ppp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112276561
Complex B
112276561
Complex C
U2 SnRNP specific factors
112276561
Chromosome and associated proteins [BR:
ppp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112276561
TFTC complex
112276561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
112276561
NCBI-ProteinID:
XP_024363738
UniProt:
A0A2K1IHF4
LinkDB
All DBs
Position
24:complement(13019356..13028591)
Genome browser
AA seq
1386 aa
AA seq
DB search
MAVQDGGGEDPGEETKASYLAKCVLKSSVVLHAVYGHIRCPSTFDVVLGKETSLELVVVS
EDGIVQSVCEQPLFGTIKDLRVLPWNESRRSPLPQTYEKDLLVLLSDSGKLSFLTFNVDL
HRFLAVVHIHIAECGNLRRELGRLLAIESRGRAVAVAAFEDRIAIFPTSIAAGNNIVDKR
MIYPRELLSSTGLTEASTSGVEEKFTGWGTIWSMTFVGMPVDHLTPIVKSDSLLLLAVLV
HRKGAASNEIVILKCDTKERIIQVTARYDSSVIRPFISPLWISVLDVPAAPGFLLLSLPG
ELLLLDLRRPSSHLLAGVCSFQISLDEEEGSLNSVAASALLELLSRGQDDSSTKSPASSS
NGEPTEVMDLNWDPSSLPTITAWSWEPYAEGQSRLALAMDTGEIHLARLIFESPDDVPRI
EVQQRQYKCSPCNVVLWTKGGLLAVFVEMGDGQVLQCSDNGKLIFKSLIQNVAPILDFSL
ADYHNEKQDQMFACSGAGNEGSLRVIRNGISVEKLYTTSPIYQGVTGTYTMRMCCRDPYH
AFFVMSFVQETRVLSVGLNFVDITEAVGFQPCASTLACGTIEDYHVVQVCSKEVIVCVPT
KTAHPAGIDSPLPFCSSWKPPQGLVVSLGAVASKAIVLALSKPGLIVMLGSQRGANGALE
LCMTQQCELKAELSCISIPDEEDWTSSPLPPSIVGLVEGTPKSRNPSGVEVGRICVVGTH
EPSVEVLSIVPGEGLAPLAVGHISLVSCVGTTLSGCVPESVRLAQFDRLYILAGLRNGML
LRYEWPASSTATLPDCTNLLSTSDWENIGITQPNLGGDKDVLEDSSPVLLHLVAVRRMGV
SPVSLISLQASLSADVIALSDRPWLLQTARHSQRIAHTSISFPSSSHAAPVNSVDCPNGI
LFVADCSLHLVEMEHLKRLNVQKLPLGRTPRRVLYHTESKTLIVMRTDYGPDGGLVSDVC
CVDPLSGANYSCYTLDAGEVARSIQLWKRRQEQLLLVGTSLIGGGGIMSSGEAESAKGRL
LVFQLLSKHVGTHSQPVMSSTNTPTLSNQSTPGSSAADPMVLSESDESDLTDGEGWELRL
KTHIILPGAVLSVSSYLGQYVLASAGNCLFCLGFRPDSPQRLRRMAMVKTRFMITSLSVH
LSRIAVGDCRDGILFYTYQEVSGQLELLYCGGIQQLVADCVLMDTDTAVVTDRRGNFCTF
SSASTPEVFAESVSPERNLSLGCWYHIGETLMRIHKASFAYESPAEESMKNCGSNDAIAH
PTHSSVVASSLLGSVFIFIKVTREEYDLLKAVQSRLAHYPITTPLLGNNHEDYRGQGCPA
GVCQVLDGDMLCQFLELTSAQQENVLTEPQGVVSLSVPNPGSSFLERSLAVDRVLRLLER
VHNSLS
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcaagatgggggaggagaggaccccggagaggaaactaaagcgagttattta
gcaaaatgtgtgctgaaaagtagcgtggttttgcacgctgtttatggacacattcggtgt
ccttccacattcgacgttgtacttggcaaggaaacatctttggagcttgtggttgttagc
gaggatggtattgttcagtcagtttgcgagcagccattattcgggaccatcaaagatctc
cgagttctgccctggaatgaatctcgtcgaagtccattgccacagacgtacgagaaagac
ttgctggtgcttttatcagattctgggaagctctcctttttaaccttcaacgttgatctt
cacagatttttggctgttgtacacatccatattgcagagtgtgggaatctgcggcgagaa
ttgggaagactccttgcaattgaatccaggggtcgtgcagtggctgtggctgcttttgaa
gatagaattgcaatctttccaacctccatagccgcaggaaataatattgttgacaagaga
atgatatatccaagagagttgctgagttcgacaggattaactgaagcaagcactagtgga
gttgaagagaaattcacaggctggggaacgatctggagtatgacattcgttggcatgcca
gtggaccacttaacaccaatagtcaagtctgactcactgcttcttcttgcagtgcttgtt
cacagaaaaggtgctgctagcaatgaaattgtcattcttaagtgtgatacaaaagagcgc
atcattcaggtcacggcccgttacgactcttctgtaataagacccttcatttcaccgttg
tggattagtgtcctagatgtcccggcagctccaggattccttctactttcgctgccaggg
gaattactgctgcttgacttaagacgtcccagtagtcatttactagccggcgtctgtagt
ttccagataagcttggatgaagaggaaggtagcctgaacagcgtagcagcatctgcactg
cttgagcttttatcaagaggtcaagatgactctagtacaaagagtccagcttccagtagt
aatggtgaacccacagaagttatggatttgaattgggacccatcgtcattaccaactatc
acggcgtggagctgggaaccttacgctgagggtcaatcgagacttgcactggctatggat
actggggagattcacttggcacggttgattttcgaaagtcccgatgatgtacctcgaatc
gaagtccagcagcggcagtataaatgttctccatgcaatgtagtactttggacaaaggga
ggtttacttgccgtatttgtcgagatgggggatgggcaggttcttcaatgtagtgataat
ggtaaattgatcttcaagagccttattcagaacgtggctcctattcttgatttttcatta
gctgactaccataatgagaaacaagatcaaatgtttgcgtgctctggggcgggaaacgag
ggttcattacgagtgatacgaaatggcatcagtgttgaaaagctttacacgacgtcccca
atttatcagggtgtgacaggtacatataccatgcggatgtgctgcagagatccataccat
gccttttttgtgatgtcttttgttcaggaaactagagtcctttcagttgggctcaacttt
gtagacatcacagaagctgtagggtttcagccttgcgcatctacacttgcgtgtggaaca
attgaggattaccatgtggtacaagtctgcagcaaagaagtcattgtgtgcgtacccacc
aaaactgcccatccagcgggcatagattcacctcttcctttctgttcatcatggaaacct
ccacagggtcttgttgtgagtctgggagcagtagctagtaaggccattgtgttagcctta
tctaaaccagggctgattgtgatgctgggttctcagcgtggtgctaatggggctctggaa
ctctgtatgacacaacaatgcgaattaaaagcagaactgtcttgtatatcaattcctgac
gaagaagattggacctcatcgcctctgcccccgtctattgttggactggttgaaggcact
cctaaaagtaggaacccatcaggggtagaggtggggaggatctgcgtcgtagggacgcat
gagccatcagtggaggttctttctatagttcctggtgagggcttggctcctctggctgtg
ggtcacatttctcttgtaagctgtgtagggacaacacttagtggatgtgttcctgaaagt
gttaggcttgcacagtttgatagactctacattcttgctgggttaaggaatggaatgctt
ttgcgctatgagtggccagctagctctactgctacgcttccagattgcacgaatctgctg
tcaacctcagattgggaaaacatcgggatcacacaaccgaatttgggtggtgacaaggac
gtgttggaagattcatcaccagtcttactacatctggtcgctgtacggagaatgggtgtt
tctcctgtttctttaatctctttgcaggcttcactgagtgctgatgtcattgctctcagt
gataggccatggttactgcaaacggcaagacatagccaacgcattgcacacacctccatt
tcttttccatcatcttcacatgccgcgcctgtaaactcagttgactgtcctaatggtata
cttttcgtggcggactgcagtttacacttggtggaaatggagcatttaaagcgcctcaac
gtacaaaaattgcccctgggccgaactccacgtagggttctgtatcacacagagtcgaag
acgttgatcgtgatgcgaacagactatggacctgatggcggcttggtttctgatgtatgc
tgtgttgatccactcagtggtgccaattactcttgctacactctcgatgctggagaggtg
gcccgctcaatccagttatggaagcgcagacaggaacagctcttgctggttggaaccagt
ctcattggtggcggcggtattatgtcgagtggtgaagcagagagcgcaaaaggccgactg
ttggtatttcagctgctgtcgaagcacgtaggaacacattcacagcctgtaatgagttct
acaaatactccaaccttatccaaccaatcaactcctggttcatcggcagcggatcctatg
gtgctttcggaatctgatgagagtgatttaaccgatggcgaagggtgggagctgcggctt
aaaactcatattattctgcccggtgctgtcctatctgtgagctcatacttagggcagtat
gtacttgcatccgctggcaattgtctattttgtctaggatttcgacctgattcaccacag
cgattacggagaatggccatggttaagacacgttttatgataacaagtctttcggttcat
ctctcaaggattgcagttggtgattgtcgggatggaattctattttatacatatcaagag
gtctccgggcagctggagctattgtactgcggtggcatccaacaacttgttgcagattgc
gttctcatggataccgacactgctgtggttacagaccgtcgtgggaacttctgcaccttt
tccagtgccagcactcctgaagtttttgcagaaagcgtgagtccagagcgcaacctatct
ttgggttgctggtaccacataggcgaaactttgatgaggattcacaaggcctcttttgca
tatgaaagccctgcagaggagagtatgaagaactgtggtagcaatgatgctatcgcccat
cctactcattcgtctgtagttgccagttcacttcttggaagtgtgttcatatttatcaaa
gtcacaagggaggaatacgatctgttgaaagctgtgcaatctcggcttgcacattatccc
attactactccacttcttgggaacaaccatgaggattatcgcggccaaggatgccctgcg
ggagtctgccaagttcttgatggcgacatgctgtgtcagtttctagaattaacaagcgca
caacaggagaatgtattaaccgaacctcagggcgttgtctctcttagtgttccaaaccca
ggttcctcttttttagaacgaagccttgctgtcgatcgtgtgttgcgcctgcttgagcgt
gtgcacaactcactttcctga
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integrated database retrieval system
