Physcomitrium patens (spreading earthmoss): 112276682
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Entry
112276682 CDS
T01041
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112276682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112276682
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112276682
mRNA degradation factors
5'-3' decay
Decapping complex
112276682
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GFIT
Other DBs
NCBI-GeneID:
112276682
NCBI-ProteinID:
XP_024363989
UniProt:
A0A2K1IGL5
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Position
24:8756455..8760944
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AA seq
844 aa
AA seq
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MKKSADKSNKMEDAEVTPNDNTQPSSRSSRDEFFDASQYAFFGRNVSQEVELGGLEEEDG
GDQFEDGEDTLDSLVDRDELAGQDAGAEWDSVSDLTSSFAKLNSASPRREEVPRSGLDEG
RQFLSNRDAAVPRERSFETAPAHNWLERSIVDREVDAGARKWWPNHQHQPVQGLDFDGMP
LGPPVHQQPGQAQLRQQQWWNNDPSLPHMSPPSALEGAYPPARAHQRAATPPGHQSGQYR
QPMAAPSNLAHIGGGVIPSHIVYGPGQSPFTSAGHILPTVQPQSGPWAQRPSVSAVPGNS
VPQQMPLMPPQVMLQYNRQQPPLHSSPLPPYGQIPYGGSPPPGADHAMQKMNEAGMPREF
WDQREQRFDPQFRPRQNHHRNHPQNLPSDGGRAVQNGLHHFRSKYMTAEEIENIVRIQWA
ATHGSDPYIDDYYHQAVQAKMAGGTPHGRRHFAPSHPRDMPSHARAAAEPHAYLQLDALG
RVPYSSIRRPRPLLEVDAARSDGMNMGDHVNGDLGIEGMSPQRPLEQEPMLAARIAVEDG
LCLLLDVDDIDRLLAVQQHPDGGAQLRRRRQILLEGLASSLQLADPLGNTSDLGNRILNG
RFVGLNPKDDLVFLRLVSLPKGKKLLTRYLQLLNPGSELVQLVCMAVCRHLRFLFSGPQS
DAGAAATTAALANAVALAVLGMDLPSLSACLLSVVLASEAAHLRPIGAPAGDGAAVILRS
LLEKASMVRRDRHAFHTPQSLTIWQHAFDAFFSVLTKYCTNKYDSVIHSLMMLYPGNIPA
INTAADEALKKEIPVELLQATLPHTSEQQRKLLYDLITNRAGAMSGLSNQSADSHSSNTA
TVRG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtctgctgacaaaagcaataaaatggaagacgcggaagtcactcctaatgac
aacacgcaaccttcctctcggtcaagtcgcgacgaattctttgatgcttctcagtatgcg
ttctttggaagaaacgtatctcaagaagttgaactaggaggtctggaggaagaagacggt
ggagatcagtttgaagatggagaggatacacttgatagtctcgttgacagggacgagtta
gcagggcaagatgctggcgctgaatgggatagcgtgtcagatctcacttcctcctttgct
aagctcaacagtgcatctcctcgaagagaagaagtgcctcgcagtgggttggatgaagga
aggcagtttctgtcgaatagagatgctgcagttccacgtgaacgatcatttgagacggct
cctgcgcacaattggctagaaaggtcaattgtggatagggaagttgatgctggtgcaaga
aagtggtggcccaatcatcagcaccagcctgttcaaggactggattttgatggtatgccc
ttgggacctcctgttcatcagcagccaggacaagcacagttacggcagcaacagtggtgg
aataatgatcctagtcttcctcatatgtcacctcctagcgcactggaaggggcttatcct
cctgccagggcacatcagcgagctgcaactccgcctggccatcaatcaggacaatataga
caacccatggctgccccttccaacttggctcatattggtgggggtgtcattccttctcac
atcgtatacggccctggacagtcaccttttacttctgccggtcacattttacctactgtg
caacctcaatctgggccttgggcgcaacggccatctgtttcagcagtccctggaaattct
gtacctcagcaaatgccactcatgcctccacaagtgatgttacagtacaatagacaacaa
ccccctctccattctagcccgcttccaccctatggacagattccatatggaggttccccg
ccacctggagcagatcatgctatgcagaagatgaatgaagctgggatgccacgcgagttt
tgggatcaaagagaacaacgctttgacccacagtttcggccaaggcagaatcatcaccgt
aatcatcctcaaaatcttccatccgatggaggcagggctgttcagaatggccttcatcat
tttaggtcaaagtacatgaccgcagaagagattgagaatatagtacgaattcagtgggct
gcaacacatgggagtgatccgtacattgatgactattatcaccaggcagtgcaagcgaag
atggcaggaggcactccccacgggcgtcgccactttgcaccctcccaccctcgtgacatg
ccttcacatgctagagcagctgctgaacctcacgcttaccttcagctggatgccctgggc
agagtcccgtactcttcgattcgcagaccgcgacctctcttggaggttgatgcagcccgt
tctgatgggatgaatatgggtgaccacgtcaatggagatttaggcattgagggaatgtca
cctcaaagacctttagaacaagagccaatgctagcagctcggattgctgtagaggatggc
ttgtgtctccttctcgacgtcgacgatatagacaggctccttgctgttcagcaacatcct
gacggaggtgcccagcttcgtaggcgtcgccaaattcttctggagggactggcttcatct
ctgcaattagctgatcctctggggaacacctctgatttgggaaatcgtattctgaatgga
cgatttgtgggactcaaccccaaagacgaccttgtctttcttcggttagtgtcattacct
aagggaaagaagcttctgactaggtacctgcagttgctcaaccctgggagtgaacttgta
cagttggtatgtatggcagtttgtcgacacttgcggtttttgttcagtggtccccagtct
gatgctggcgcagctgctactacagctgccttggctaacgcggttgccttggctgtattg
ggcatggaccttccgtccttgagcgcttgtttactctctgtcgtgctcgcaagcgaggct
gctcatcttcgcccaataggtgctccagccggtgacggggcagccgttatacttagatca
ctattagaaaaggcgagcatggtgaggagggacagacatgccttccataccccacagagc
cttactatatggcagcatgcttttgacgcatttttttctgtacttacgaagtactgtacc
aataagtatgacagcgtgatacactctttaatgatgttgtatcccggaaatataccggct
atcaataccgctgcggatgaagctttgaagaaagaaattcctgtcgagctgcttcaagcg
actcttccgcacacgagtgaacaacagaggaagctgctgtatgaccttatcactaaccgg
gctggtgctatgagtggtctatctaaccagtcagcggacagtcattcgagtaacactgct
accgtacgtggctaa
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