Physcomitrium patens (spreading earthmoss): 112276707
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Entry
112276707 CDS
T01041
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112276707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112276707
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112276707
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112276707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112276707
NCBI-ProteinID:
XP_024364048
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All DBs
Position
24:complement(13171233..13180259)
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AA seq
951 aa
AA seq
DB search
MGATRKLQGEIDKVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKMWIQSSEIKDKKALLEARKQIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPRDKA
KGESRDWLNNMVSELESQIDSFEAEMEGLQVKKGKARPPRLTHLEESINRHKLHIIKLEL
VLRLLDNDELSPDEVMEVRDLVEDYVERNQDDFDNFEDVDDIYQSLPLDKIEALENLEAI
PNVAPSIVVKEKAAVAAAAGVGAPLGSVLKPTISLPVVQSVTASSLGISPLVSPSSQPLA
NDDILTSSESSAESPGPRTRGAPTLATSPTSSISTSSSSAAVLSVSPVASGGVTSPSTGA
GSLSRQLGTLNTMGTPTVISPARPVSVKSLPTASALQPTLSQGRMKEEDTNVLPGRRVGP
GLSETSIRGQSPPPVTAPGNGSLLVSPAMDLSMRLGVTGGDDRPPTGGGLSQQFAGTLGG
GNRVFGPGGLGDTGIGASDTGLSGTRLFPGSGMSTGGQWRPHSANTQETGPYHVRSEIMP
DQKQKFLQRYQQTQQGHSAASLLTGGSQLSSSSLKQPPGLSAPQANLLQQAQLHILQQQQ
QQNLQNSMLGASQNSSTQRQTSLGLVTSSQSSSPSSTPVPAHLSQGLSTSSPQQFAQLSL
SSTTSPTEHDASSRRMESAQQQMPSQLLKSSEDSGADVASLGSAFRSGMTFSDDDLKNSD
TFDVSGPKEGDSWYGKSTLQVGTPGSLADYSQQSRDADLAPGQQSHHPQSSMNPGVIGRR
SVPDLGAIGDNIVPSLGREHFVAQHEALEHAFRNLPLPKDSERPKSYTPRHPTITPASYP
QVQAPIIDNPGLWERLDKDVLFYAFYYQQGTYQQYLAARELKKQSWRYHKKYNTWFQRHE
EPKVTTDEYETGTYVYFDFHVVHNDYQQGWCQRIKTEFTFEYCYLEDELVV
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgacacggaaattacaaggagaaattgacaaagttctgaagaaagtgcaagaa
ggcgtcgatgtcttcgatagtatctggaacaaggtgtacgatactgaaaatgcaaatcag
aaggagaagttcgaggccgatttaaagaaagagatcaagaagctacagcgttatcgtgat
caaatcaagatgtggattcaatccagtgagattaaagacaaaaaggctttacttgaggct
cggaagcagatagagagagaaatggaaagatttaaagtatgtgagaaggaaaccaagaca
aaagcattttccaaagaaggcctgggtcaacaacctaaaacggatccacgagataaagca
aaaggggagtcacgcgattggcttaacaatatggttagtgagctggaatctcaaattgac
tctttcgaagcagagatggaaggccttcaagtcaaaaaaggaaaggcccggcctccccgt
ttgactcatctcgaggagtcaatcaatcgacataaattgcacatcataaagttggaacta
gtgttgcgtctattggacaatgacgaactatctcctgacgaggtgatggaagtaagagat
ctagttgaggactacgttgaacgtaatcaggatgattttgataatttcgaggacgttgac
gacatataccaatctctacctcttgataagattgaagcactggaaaatctggaagcaata
ccaaatgttgctccttctattgtcgtcaaagagaaggctgcagttgcagcagctgctgga
gttggtgcacctcttggttctgttctgaaacccactatttctttgccagttgttcaatcc
gtcactgcttcatcactaggaatatcccctcttgtctctccatcatcacaaccgcttgcc
aacgatgacattttgacttcttcagaatcatctgccgagtctccagggccccggacacga
ggtgcccctacgttagcaacgtctcccacaagtagtatatcaacttcaagctcttctgca
gccgtacttagtgttagtccagtggcaagtggaggtgttacttcaccttcaactggagct
ggatccctgtcccgccagctcggcactttgaacactatgggtactccaaccgttatctcc
cctgcaaggcctgtgtcagtaaaatctctacctacagcttctgctcttcaacccactctt
tcgcaaggtcgaatgaaagaggaggatacaaatgtgctcccaggacggcgtgtaggacca
ggattgagtgaaacttccattcggggacagtcccctcctcctgttacggcacctgggaat
ggaagccttctagtgtctcccgcgatggatttgagtatgaggcttggtgtcactggtggt
gatgacagacctccaacaggtggcggtttgtcacagcagttcgctgggactttaggtggt
gggaaccgtgtatttggaccgggaggtctgggtgacactggaataggggcatcagacacc
gggctctcgggcactcgtttgtttccaggcagtggtatgtcaactggtgggcagtggcgt
ccacattctgcaaatacacaagaaacgggcccatatcatgtgcgatctgaaatcatgccg
gatcagaaacaaaaattcttacaacggtaccaacagacacagcaaggtcactctgctgct
tctctacttacagggggatctcagctttcaagctcctcactcaagcaacctcctggcctt
tctgctccacaggcgaatcttcttcagcaggcccagctacacatattgcagcaacaacag
cagcagaacttgcaaaattcaatgttaggagcttctcagaactcatccactcaaagacag
acgtcacttggtttggttacaagctcgcagtcatcttctccttcctctacacctgtacca
gcacatttgtcgcaggggttgtcaacatcctccccacaacagtttgcacaattgtcttta
tcgtctacgacttctccaactgaacatgatgccagcagtagaagaatggagtcagcacag
caacagatgccttctcagctgcttaaatcatcagaagactctggtgctgatgtcgcatct
ctgggatcagccttcagaagtggcatgacattcagtgatgatgatctaaaaaattcggat
accttcgatgtctccggacccaaagaaggtgacagttggtatggcaaatctactctgcag
gtcgggacaccgggctcactcgctgactacagtcaacaatctcgagatgctgatcttgca
ccagggcagcagagtcaccatccacaatcctctatgaacccaggtgttataggacggcgg
agtgttccagatcttggcgcaatcggggataatatagtcccatctttgggacgcgaacat
tttgtagcacaacatgaagctttggagcatgctttcagaaacctaccactaccaaaggat
tcagaaaggcctaagagctacactccgaggcatccaaccattactcctgcttcgtatccg
caagtgcaagccccaattatcgataacccaggcctttgggaacgactagacaaagatgtt
cttttctatgccttctattatcaacagggtacttaccaacagtatttagcagctcgggag
ctaaaaaagcaatcatggcggtaccataaaaaatataacacttggtttcaacgtcacgaa
gagcccaaggttactacagatgagtatgaaactggcacttatgtgtatttcgacttccac
gtcgtccacaatgactatcaacaaggctggtgtcaacgaatcaagacagagttcacgttt
gagtactgttatctcgaggatgaacttgttgtttga
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