Physcomitrium patens (spreading earthmoss): 112276824
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Entry
112276824 CDS
T01041
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112276824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112276824
03009 Ribosome biogenesis [BR:
ppp03009
]
112276824
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112276824
Spliceosome [BR:
ppp03041
]
Complex A
U2 snRNP components
U2 related factors
112276824
Complex B
112276824
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112276824
Ribosome biogenesis [BR:
ppp03009
]
Eukaryotic type
90S particles
Helicases
112276824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
AAA_30
ABC_tran
T2SSE
SRP54
AAA_7
FtsK_SpoIIIE
TsaE
NACHT
PhoH
Motif
Other DBs
NCBI-GeneID:
112276824
NCBI-ProteinID:
XP_024364321
LinkDB
All DBs
Position
24:complement(1404349..1409275)
Genome browser
AA seq
715 aa
AA seq
DB search
MAGERKRKLSLFDVVDESVNGTEKMKANGGPVLNPHTGRPYSAKYFEILEKRRTLPVWQQ
KAEFLNILAKNQTMILVGETGSGKTTQIPQFVVEAGYTSNRKQVACTQPRRVAAMSVSRR
VADEMDVTIGDEVGYSIRFEDCSGPKTTLKYLTDGMLLREAMTDPLLERYRVIILDEAHE
RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQAYFNGAPLMKVPGRLHPVEIFYT
QEPERDYLEAAIRTVVQIHICEPAGDILVFLTGEEEIEDACKKIGREVQNLGDQVGPVKA
VPLYSTLPPAMQQKIFDAAPPPAKDGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQ
KVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFQNDLQPQTYPEILR
SNLANVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTKLGELMSE
FPLDPQMSKMLVVSPEFNCSNEILSITAMLSVPNCFLRPRDAQKAADEAKARFSHIDGDH
LTLLNVYHAYKQNGEDATWCYDNFINVRAMKSADNVRTQLVRIMNRYNLKMCSTDFNSRD
YYVSIRKAMLAGYFMQVAHLERTGHYLTVKDNQMVHLHPSSCLDHKPEWVIYNEFVLTTR
NFIRIVTDVRGEWLIDVAPHYYDLSNFPQCEARRVLERLYMKREREKSEANGGKR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgagaggaagaggaagttgagcctgttcgacgttgtggacgagtccgtcaat
ggaaccgagaagatgaaagcgaatggcggtcccgtgctgaaccctcacaccggcaggccg
tactcggcgaagtatttcgagattttggagaagcggcgcacgctgccggtgtggcagcag
aaggcggagtttctgaacatcctggccaagaaccagacgatgattctggtgggagagact
ggttccggaaagaccacgcagattccccaattcgtggtggaagcagggtatacgagcaac
aggaagcaagtggcttgcacgcagccaagaagggtggcggccatgtcagtgtcgcggcgt
gttgcggacgagatggacgtgaccattggagatgaggtcgggtacagcattcgtttcgag
gattgcagcgggccgaagacgacgttgaagtatttgacggatggtatgctgttgcgagag
gccatgacggatcctttgctggagcggtacagagtgatcatcctggacgaagcgcacgag
aggacgttggcgacggatgtgctgttcgggctgctgaaggaggtgttgaagaacaggccg
gacctgaagctggtggtgatgagtgcgacgttggaggcagagaagttccaggcgtacttc
aacggggcgccgctgatgaaagtgcccgggaggctgcacccggtggagatattctacacg
caggagccggagagggactacctggaggcggcgattcggacggtggtgcagattcacatc
tgcgagccggcgggagacatcctggtgtttttgacgggggaggaggagatcgaggatgcg
tgcaagaagataggaagggaggtgcagaacctgggggaccaggtggggccggtgaaggcg
gttccgctgtactcgacgctgccgccagcgatgcagcagaagatcttcgatgcggcaccg
ccaccggcaaaggacgggggaccgccggggaggaagatcgtggtgtcgacaaacatcgcg
gagacgtcgctgacgatcgacgggatcgtgtacgtgatcgacccggggttcgcgaagcag
aaggtgtacaatcctcggattcgagtggagtcgctgctggtttcgccgatctcgaaggcg
agcgcgcaccagagggcggggcgtgcgggtcgaacgcagccggggaagtgcttcaggctg
tacacggagaagagtttccagaacgacctgcagccgcagacgtatccggagattctgcgg
tcgaacctggcgaacgtggtgctgacgctgaagaagttggggatcgacgacctggtgcac
ttcgacttcatggaccctccggcaccggagacgctgatgagggcgctggagctgctgaac
tatctggcagcgctggacgacgacgggaatctgacgaagctgggagagctgatgagcgag
tttccgcttgacccacagatgtcgaagatgctggtggtgagcccagagttcaactgttcg
aacgagatcctgtcgatcacggcgatgttgtcagttcccaattgctttctgcgaccaaga
gatgctcaaaaggcagcagacgaagcgaaggctcggttttcgcacattgacggggaccac
ctgacgcttctgaacgtgtaccatgcgtacaagcagaacggtgaggacgccacgtggtgt
tacgacaatttcatcaacgtgcgtgcgatgaagtcagctgacaacgtgcggacgcagctg
gtgcgcatcatgaatcggtacaacctgaagatgtgcagcacagacttcaacagccgggat
tattatgtgagcattcggaaagcgatgcttgcggggtactttatgcaggtggctcatctg
gagcggacgggtcactacctgacagtgaaggacaaccagatggttcatctgcatccgtcg
agttgtttggaccacaagccggagtgggtgatatacaacgagtttgtgctgactactcgg
aacttcattcgaatagtgacagatgtgcgtggggaatggctgatagacgttgctccgcat
tactacgatttgagcaactttccgcagtgcgaagctagacgcgtgctggaaagactgtac
atgaagcgcgagagggagaaatctgaggctaacggtggaaagagatag
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