Physcomitrium patens (spreading earthmoss): 112276891
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Entry
112276891 CDS
T01041
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112276891
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112276891
Spliceosome [BR:
ppp03041
]
Complex C
Other components
Complex C specific factors
112276891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_30
AAA_19
Flavi_DEAD
ResIII
UvrD-helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112276891
NCBI-ProteinID:
XP_024364457
LinkDB
All DBs
Position
24:32623..39907
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AA seq
684 aa
AA seq
DB search
MRSGLAGAWKPGTAKPVPQAVAVEDLNDETSFTIHASVQKQRHQLSVYKQRDNLLYLVEN
HGTTIVVAETGSGKTTQIPQLLVEAGWAEGGRTIACTQPRQIAAQTIAARVAEEMRVTLG
TKVGYSVRFDEVATRGVTQIKYMTDGVLLREMMSDPLLSSYSVIMVDEAHERSIATDILL
GLLKKIIKRRPDLRIVVASATMDIKAFHDFFDTSREKLQNSIHRESVPNRSPAVLSVEGR
THSVLIHYCDKPVQDYVRTAVSTTIAIHKIEGPGDILVFLTGQDDVNAAVQMISEEAEKL
PRALVALPLYAGLPASDQELVMRPSLSGRRKVVLATNIAETSVTLPGIVYVIDSGFSKQK
FYNPITNVEALVAAPISQASADQRAGRAGRERPGKCFRLYTEDAHAAMRPERLPEIQKGN
LLSTILQLKALGIDNVMQFDWLAPPPAELMVRALELLFALGVMDGHAKLTSPLGHQVSEL
PLDPMSAKMLLTAAQTGCQKEGLTIAAVLTVQTIWASGRERKEMDEARAQFAVAEGDMIS
YLNVFEGYLHVKNRNQWCYENCVNYHALAKVAKVRSQLSTLLQQLGGPRQQQHDGDVKLV
AKAVTAGFFPNAARLEAEGGNTYRSLRGNQELFIHPSSVLFRASPKWVVFQSIIFLERHY
MWNVTAINPAWLTELAPHFYQLKG
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtggtttggctggagcgtggaaaccaggaactgcgaagcctgtaccacaggca
gtggcagttgaggatctgaacgatgagacgagttttaccattcacgcaagtgtgcaaaaa
cagaggcatcagttgtctgtatataagcagagggataacctcctttatctcgtggaaaac
catggcaccaccattgtggtcgccgagactggaagtggaaagactactcagatcccgcag
cttctggtggaagctggttgggcagaaggtggccgaacaattgcgtgcactcagccccgc
cagattgcagcgcagacgattgcagcgagggtggcagaggaaatgcgggtcacgctaggt
acaaaggttgggtattccgttaggttcgacgaagttgcaactcgtggtgtgactcaaatt
aagtacatgacagatggtgtattgttgagggaaatgatgtcggacccactcctctcttcc
tacagtgtcatcatggtggacgaagctcatgaaagaagtatagccaccgacattcttcta
ggacttctcaaaaagatcatcaagcgacgccccgatttgcgtatagttgttgcttcggcc
acgatggacataaaagctttccatgatttttttgatacaagcagagagaagctacagaat
tcaattcatagagagtcagtgcctaatcgaagtccagctgttctgtcggttgaaggaagg
acacactctgtacttatacattactgtgacaagcccgttcaagactatgttcgaactgca
gtttcaacgacaatagctattcataagatcgaagggccgggtgacatcttggtgtttctc
actggtcaagatgatgtgaatgcagctgtacaaatgatcagtgaagaagcggagaagtta
cctcgggcgctggtggctcttcctctttatgcaggattgcctgcctctgatcaggagctt
gtcatgcggccttcattatcaggacgacggaaggtcgttttggccaccaacattgcggag
acttctgtcaccttaccaggaattgtttatgtgatcgacagtgggttttcaaaacaaaaa
ttctacaatcccatcacgaatgttgaagcattagttgcagcccctatatctcaagcctca
gcagaccaaagagcgggacgagcaggtcgtgaacgtccgggaaaatgctttcgcttgtac
actgaagatgcgcatgcggccatgaggccagaaaggttgcctgagattcagaaaggaaat
cttctatccacaattcttcaactgaaagcattgggaatagacaatgtgatgcagtttgat
tggttggcaccacctcctgcagagttaatggttagggcattggagcttctatttgctctc
ggtgtaatggatgggcatgcaaaactgacctcacctttggggcatcaggtttcagagctt
ccacttgatcccatgtcagccaagatgctgctcactgccgctcaaactggttgtcagaag
gagggactcacaattgcagctgtattgacggtccaaacgatttgggcatctggtagagag
agaaaggagatggatgaagctcgtgcacagtttgcagtcgctgaaggggatatgatttct
tacttgaatgtttttgaaggatacttgcacgttaagaaccgaaatcagtggtgctatgaa
aattgtgtgaactatcatgctctagcgaaggttgcaaaagtacggtcccagctcagtacg
ttattgcagcagcttgggggacctagacaacagcagcacgatggagatgtaaagctggtt
gctaaggcagtcacagcaggtttttttcccaatgctgctcgtcttgaggcggaaggtgga
aatacatatcgttctttaaggggtaatcaggaactattcatccatccatcctctgtttta
ttcagagcttcaccaaagtgggtggtattccagtcaattattttcttggaacggcattat
atgtggaatgtcacagccattaacccagcatggcttacagaattggcccctcatttttac
cagctcaaaggttga
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